Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05577 ATGAGTCAACTCGGTCTCCTATTGCAGGAATCACTACGTCCTCAAAGAGAAGCAAGAACAATTCTCGGTTTATTAACAGAACAAATGGACGGTTTAGATACAGGAACAACCAGAAGACGTAGTCTTAAAGAACGGTTCAGATTCACCGGAATGGGTTGCTGTGGAGCCACCTGGGTTTTCCGTCCAATTATCAGGCACGAACAACAAGGAGAGGAGAGAGTAAGAGAAAGAGAAGCTGCGGAACAGGTAATTCAAGATCCGAACCCGGTTGAACCGGAATGTGTAAACCCGGGATCATCTGGTTCTGGAATGAATCTAGCGACGGCGTTGGCGGCGGAGCGTCAGATGAGAGGATCGGAGGAGGCGAGTGGAGGAGAAGGTGGGACAACGTGGAGAGTTTCGTTGATGAAACTGTTAGAAGAAACGGAAGTTGAAAATGAAAGTACTACAGCGGTAGTTGTAGAAGGGAATGATACGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCTTTCATACCGTGTGGACACACTTTCTGTAGAGTGTGTTCAAGGGAACTGTGGCTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGACATTTTCTGA 630 0.473 MSQLGLLLQESLRPQREARTILGLLTEQMDGLDTGTTRRRSLKERFRFTGMGCCGATWVFRPIIRHEQQGEERVREREAAEQVIQDPNPVEPECVNPGSSGSGMNLATALAAERQMRGSEEASGGEGGTTWRVSLMKLLEETEVENESTTAVVVEGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05577 209 PANTHER OS01G0917900 PROTEIN 7 209 - -
Trre15g05577 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 208 IPR013083 -
Trre15g05577 209 SMART ring_2 161 198 IPR001841 -
Trre15g05577 209 CDD RING-HC 161 198 - -
Trre15g05577 209 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Trre15g05577 209 Pfam Zinc finger, C3HC4 type (RING finger) 158 203 - -
Trre15g05577 209 SUPERFAMILY RING/U-box 154 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05577 Trre-Chr15 64239712 64240341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05577 21 209 C3H Transcription Factor Family AT4G22250 54.774 1.47e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05577 - - mtr:11446421 337.421