LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g05573	ATGACAACATACACTCCTGATTTTCTCAAGTTACCACAAGGTGTATGGGCACAAGAAGGAGGACAAAAAAATGCAGGTGATGGAGTTGTTATTGGTGTTATTGATAGTGGCATTAATCCACTTCATCCAAGCTTTGGTATCCAACATTTCACTTCAAATGTCTCTCACTTTTCTGGTGCTTGTGTCACTGGTCCACACTTTCCACCTGGTTCTTGCAATGGAAAGATTATTTCAGCTAAGTATTTTTCAGCTGGTGCTCAAGCTATTGTTAACTTTAATGCTTCTGTGGATTTTCTTTCACCCTATGATGCTGATGGACATGGCAGTCATGTGTCATCTATTGCTGCTGGAAATGCTGATGTTCCTGTTATAGACAATGGTTTTTGCTATGGACGAGCCAGCGGAATGGCACCGCGTGCAAGGATTGCTGTTTATAAGGCTATTTATCCATCTGTGGGAACTCTAGCAGATGTTGTCGCAGCTATCGATCAAGCTGTTCAAGATGGGGTGGATATCATATCACTATCTATTGGACCAAGTAGACCAACAGAAGATACATTGACATTTCTCAGCATCTTTGATATTACCTTATTATTTGCGAGAAAAGCGGGAGTTTTTGTGGCACAAGCTGCAGGTAATAGTGGTCCATCATCTTCAACTGTAGTGTCATTCAGTCCTTGGAGTGTTGGTGTTGCTGCGTGCAACACGGACAGAAGATATATTGCTTCAATTATTCTTGGAAATGGCACCATTGTTGATGGCATTGGACTAACAGGACCAACTTTTGGAAATGGGACAGTTTTCCATAAACTTGTATCAGCAAAGGATGCAGTAAAAACAAATGGAACATTTCCAAAGACACCAGAGTACATAGAAGAGTGCCAACATCCAGAAGCTTTGGATCCTACTAAAGTGTTTGGAAGTGTCATTATCTGCAACTTCTCAGAAGGATTCCTTGATGGCACATCAACACTTTCTAACATTATCGACACCGCCAAGGCCCTAAAATTTGAGGGTTTTATTCTGACTGCAAACCCGAGCTACGGAGATTATATTGCAGAGGCAATTCCCTTTGCTATTTCTGGTATCTTGATTTCTTCTGTAGCAGATTCCAAGGTTATAATGCAATATTACGAAAGTCGAACAAAGAGGGACGAGAAAGGAACTGTTACAGAATTTGGTGCTTGGGTATCTACAGGTGAAGGAAGGGTTGCCTCTTTCAAAGGGCGATCACCGGTTGTTAGTAGATTTTCTTCAAGGGGTCCAGATATCATTGATGCAAACAGAAGTATCGCTGATGTTCTTAAACCTGATATTCTTGCTCCAGGACACCAGATATGGGGTGCATGGAGCCCTATTAGTGCCAAACTACCTATACTAACAGGACACAATTTTGCATTATTATCCGGTACCAGCATGGCGGCGCCTCATGTGGCTGGAATCGCAGCACTAATCAAGCAACATAATCCATCATGGACTCCATCCATGATAGCATCTGCAATCACCACAACAAGCTCAAAGTATGACAATCTTGGAGATCCTATGATGGCCGAAGGCTATGAGCCCCACTCATTGCATCGTTCCACTCCTTTCGAATATGGGGCGGGCATTGTGAACCCCAGTCGTGCCATTGATCCAGGCCTGGTACTGTCAACAGATTATGTAGACTTCATCAGCTTCCTATGCTCTTTGCCAAACATCGATTTAGATACAATAACTACAGCAACGGGAGAACCTTGCAAGAGCCCATTTGACCATCCATCTCATTTAAACCTTCCATCAGTGACAATATCTGCACTGAAAGGATCAATTTATGTGAGAAGAACTGTGACGAATGTAGGGAACAGCACAGAGACATACTTGGGCTCTGTTCTAGCTCCTAACGGAACTACAGTTAACCTGAATCCAACTTGGTTTACCATAAGTCCACAAGGATCACAAGATCTGGATATACAAATCAATGTCGTTCAACCAATGGAAGATTTTCGCTTTGGTGAAATTGTTTTGACAGGAAGTATGGACCACATAGTAAGAATAACTTTGTCAGTTGTGCCAGTTTCAGCATAA	2067	0.4228	MTTYTPDFLKLPQGVWAQEGGQKNAGDGVVIGVIDSGINPLHPSFGIQHFTSNVSHFSGACVTGPHFPPGSCNGKIISAKYFSAGAQAIVNFNASVDFLSPYDADGHGSHVSSIAAGNADVPVIDNGFCYGRASGMAPRARIAVYKAIYPSVGTLADVVAAIDQAVQDGVDIISLSIGPSRPTEDTLTFLSIFDITLLFARKAGVFVAQAAGNSGPSSSTVVSFSPWSVGVAACNTDRRYIASIILGNGTIVDGIGLTGPTFGNGTVFHKLVSAKDAVKTNGTFPKTPEYIEECQHPEALDPTKVFGSVIICNFSEGFLDGTSTLSNIIDTAKALKFEGFILTANPSYGDYIAEAIPFAISGILISSVADSKVIMQYYESRTKRDEKGTVTEFGAWVSTGEGRVASFKGRSPVVSRFSSRGPDIIDANRSIADVLKPDILAPGHQIWGAWSPISAKLPILTGHNFALLSGTSMAAPHVAGIAALIKQHNPSWTPSMIASAITTTSSKYDNLGDPMMAEGYEPHSLHRSTPFEYGAGIVNPSRAIDPGLVLSTDYVDFISFLCSLPNIDLDTITTATGEPCKSPFDHPSHLNLPSVTISALKGSIYVRRTVTNVGNSTETYLGSVLAPNGTTVNLNPTWFTISPQGSQDLDIQINVVQPMEDFRFGEIVLTGSMDHIVRITLSVVPVSA	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g05573	688	ProSitePatterns	Serine proteases, subtilase family, aspartic acid active site.	31	42	IPR023827	-
	Trre15g05573	688	SUPERFAMILY	Subtilisin-like	2	548	IPR036852	GO:0004252\|GO:0006508
	Trre15g05573	688	PRINTS	Subtilisin serine protease family (S8) signature	103	116	IPR015500	-
	Trre15g05573	688	PRINTS	Subtilisin serine protease family (S8) signature	26	45	IPR015500	-
	Trre15g05573	688	PRINTS	Subtilisin serine protease family (S8) signature	469	485	IPR015500	-
	Trre15g05573	688	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	2	681	IPR045051	-
	Trre15g05573	688	ProSitePatterns	Serine proteases, subtilase family, serine active site.	470	480	IPR023828	-
	Trre15g05573	688	Gene3D	-	561	685	-	-
	Trre15g05573	688	CDD	PA_subtilisin_like	243	385	-	-
	Trre15g05573	688	CDD	Peptidases_S8_3	1	506	IPR034197	-
	Trre15g05573	688	Pfam	Fibronectin type-III domain	590	683	IPR041469	-
	Trre15g05573	688	Pfam	Subtilase family	26	514	IPR000209	GO:0006508\|GO:0008236
	Trre15g05573	688	ProSiteProfiles	Serine proteases, subtilase domain profile.	6	544	-	-
	Trre15g05573	688	Gene3D	-	237	405	-	-
	Trre15g05573	688	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	107	117	IPR022398	-
	Trre15g05573	688	Gene3D	Peptidase S8/S53 domain	28	557	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g05573	Trre-Chr15	64184527	64187237	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g05573	1	683	Subtilisin-like Serine Gene Family	AT1G62340	62.771	0.0	862

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g05573	-		-	psat:127138335	1125.54