Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05569 ATGGGATGTTTGAAGGAGGCTATAGTTGCACAAGAAGAACAGTTAAAGCAGGATACTAACATTAAGCCGGACAAAATCCCAAGATGCTCAAAAGATTTTGGAATTTCATATAAGAGAAGATTTCAAGAATATCATACACATCATACTGATACAAATGCAGAAGGGGAAAAAGATGTTATGGAATGTTTAAAGGAGACACCCAATCACCCATGTAAGAAAGGATTTGAGCCAAAAAAGCTTGCTGTCAAAAACAAGAAATGGGAACTTGAAGATGCTTTCTTGATTGACGAGTTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACGAAGAACAGGAGCAGAGCTGGTAGAATCGAGAACACAACGCAGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCATTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTACCCTGATCTGTCTATAGAAGAAGTTACTGAAAGTTGCCCATTTTGCCTTAAAAATTGCAATTGCAATGTCTGCCTGCGCACTAAAGGAACAATTAAGACATCTAACATGGCTGTAACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAATATTCAAGGAAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGACAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATTGACCTTCATCGGAGCTGCCCCAACTGTTCCTACGAGCTTTGCCTTAAATGTTGCCAAGAAATACGCGATGGAAGCATTACTGCCCGGGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGATTTCAGATGGTAATCTTGAGGTATCTACCAAGTGGAATGCCAAGAGTGATGGAAGTGTTAGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAAGCGCATCCTCCCCCATGGGTGGATGTCTGACTTGGAAGGAAAAGCTCATGACATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCAGCAGGAAGAAGTTGGATCCAACTACAACTCTATGAGAAAGGAATCCTTCACAGAAGGCACAAATGAGAGTAACATATGCTGTTCAGAGGCAAGAGACATTTTGAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGCATTGTGTGATAACGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAAATGCTCAAGCTAAAAGATTGGCCCCCTTCTGATAAATTCGAAGATCTTTTGCCTCGTCATTGTGATGAATTTATTCGTTTCTTGCCATTTCAACAGTACACTGATCCTCGGGCTGGAATACTTAACCTGGCTGTGAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATACATTGCTTATGGAATTACAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCCGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGCGCTCCAGACTGGGCTGCTGTATGCCTAAATGGTCGACCTTGCGATGACAGAGAACGTATAGAAAATAAGGAAGCATTAGAATGCAAAAATACGGATAACTGTCCTACTGTAATCAGTGGGGATATCTTTCAAAATGATGTGTCTGAGGGGGACACTTTTCCTGCTACTTGTACAGAAAATGAAACTACGGTAACAAGTAGTGCTTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCAAAAGAATTCAGGCATACTTACTGTTCACCGGTCGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCATAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGATCAAGCTGTGAAAGACCTAAAAGCTTTACTTGATTGTTCTTGA 2574 0.4044 MGCLKEAIVAQEEQLKQDTNIKPDKIPRCSKDFGISYKRRFQEYHTHHTDTNAEGEKDVMECLKETPNHPCKKGFEPKKLAVKNKKWELEDAFLIDEFEQDEEMFFLLKTKNRSRAGRIENTTQGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDLSIEEVTESCPFCLKNCNCNVCLRTKGTIKTSNMAVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEANIQGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRDGSITARAEMKFQYVNRGYDYMHGGDPLPVSCDLEISDGNLEVSTKWNAKSDGSVSCVPKEMGGCGSSVLELKRILPHGWMSDLEGKAHDMLKIWEVEQKTFQQEEVGSNYNSMRKESFTEGTNESNICCSEARDILRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRPCDDRERIENKEALECKNTDNCPTVISGDIFQNDVSEGDTFPATCTENETTVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05569 857 Gene3D Cupin 416 829 - -
Trre15g05569 857 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 49 853 IPR045109 GO:0032454|GO:0033169
Trre15g05569 857 SMART cupin_9 534 820 IPR003347 -
Trre15g05569 857 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 128 201 IPR018866 -
Trre15g05569 857 ProSiteProfiles JmjC domain profile. 553 820 IPR003347 -
Trre15g05569 857 ProSiteProfiles Zinc finger RING-type profile. 133 178 IPR001841 -
Trre15g05569 857 SUPERFAMILY Clavaminate synthase-like 434 856 - -
Trre15g05569 857 Pfam JmjC domain, hydroxylase 691 803 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05569 Trre-Chr15 64154637 64159106 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre15g05569 JmjC 4e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05569 K15601 K21989 gmx:100797860 1242.25