Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05568 ATGGGATGTTTGAAGGAGGCTATAGTTGCACAAGAAGAACAGTTAAAGCAGGATACTAACATTAAGCCGGACAAAATCCCAAGATGCTCAAAAGATTTTGGAATTTCATATAAGAGAAGATTTCAAGAATATCATACACATCATACTGATACAAATGCAGAAGGGGAAAAAGATGTTATGGAATGTTTAAAGGAGACACCCAATCACCCATGTAAGAAAGGATTTGAGCCAAAAAAGCTTGCTGTCAAAAACAAGAAATGGGAACTTGAAGATGCTTTCTTGATTGACGAGTTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACGAAGAACAGGAGCAGAGCTGGTAGAATCGAGAACACAACGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCATTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTACCCTGATCTGTCTATAGAAGAAGTTACTGAAAGTTGCCCATTTTGCCTTAAAAATTGCAATTGCAATGTCTGCCTGCGCACTAAAGGAACAATTAAGACATCTAACATGGCTGTAACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAATATTCAAGGAAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGACAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATTGACCTTCATCGGAGCTGCCCCAACTGTTCCTACGAGCTTTGCCTTAAATGTTGCCAAGAAATACGCGATGGAAGCATTACTGCCCGGGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGATTTCAGATGGTAATCTTGAGGTATCTACCAAGTGGAATGCCAAGAGTGATGGAAGTGTTAGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAAGCGCATCCTCCCCCATGGGTGGATGTCTGACTTGGAAGGAAAAGCTCATGACATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCAGCAGGAAGAAGTTGGATCCAACTACAACTCTATGAGAAAGGAATCCTTCACAGAAGGCACAAATGAGAGTAACATATGCTGTTCAGAGGCAAGAGACATTTTGAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGCATTGTGTGATAACGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAAATGCTCAAGCTAAAAGATTGGCCCCCTTCTGATAAATTCGAAGATCTTTTGCCTCGTCATTGTGATGAATTTATTCGTTTCTTGCCATTTCAACAGTACACTGATCCTCGGGCTGGAATACTTAACCTGGCTGTGAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATACATTGCTTATGGAATTACAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCCGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGCGCTCCAGACTGGGCTGCTGTATGCCTAAATGGTCGACCTTGCGATGACAGAGAACGTATAGAAAATAAGGAAGCATTAGAATGCAAAAATACGGATAACTGTCCTACTGTAATCAGTGGGGATATCTTTCAAAATGATGTGTCTGAGGGGGACACTTTTCCTGCTACTTGTACAGAAAATGAAACTACGGTAACAAGTAGTGCTTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCAAAAGAATTCAGGCATACTTACTGTTCACCGGTCGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCATAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGATCAAGCTGTGAAAGACCTAAAAGCTTTACTTGATTGTTCTTGA 2571 0.4041 MGCLKEAIVAQEEQLKQDTNIKPDKIPRCSKDFGISYKRRFQEYHTHHTDTNAEGEKDVMECLKETPNHPCKKGFEPKKLAVKNKKWELEDAFLIDEFEQDEEMFFLLKTKNRSRAGRIENTTGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDLSIEEVTESCPFCLKNCNCNVCLRTKGTIKTSNMAVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEANIQGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRDGSITARAEMKFQYVNRGYDYMHGGDPLPVSCDLEISDGNLEVSTKWNAKSDGSVSCVPKEMGGCGSSVLELKRILPHGWMSDLEGKAHDMLKIWEVEQKTFQQEEVGSNYNSMRKESFTEGTNESNICCSEARDILRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRPCDDRERIENKEALECKNTDNCPTVISGDIFQNDVSEGDTFPATCTENETTVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05568 856 ProSiteProfiles Zinc finger RING-type profile. 132 177 IPR001841 -
Trre15g05568 856 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 127 200 IPR018866 -
Trre15g05568 856 SMART cupin_9 533 819 IPR003347 -
Trre15g05568 856 Gene3D Cupin 415 828 - -
Trre15g05568 856 Pfam JmjC domain, hydroxylase 690 802 IPR003347 -
Trre15g05568 856 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 86 852 IPR045109 GO:0032454|GO:0033169
Trre15g05568 856 ProSiteProfiles JmjC domain profile. 552 819 IPR003347 -
Trre15g05568 856 SUPERFAMILY Clavaminate synthase-like 433 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05568 Trre-Chr15 64154637 64159106 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre15g05568 JmjC 4e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05568 K15601 K21989 gmx:100797860 1244.18