Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05567 ATGGAAGTAGTAGTTCCTACACAAGAACAGCCAAATCAACATACCGAGGATAATTTGAAGTTCTCGGGATGCTCAAAACCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAAGAGTGTGGTGATAATGAGAAACGAGAAAAAGAACCAGAAGGGGAACAAAATACTATGGGATGTTTGAAGGAGGCTATAGTTGCACAAGAAGAACAGTTAAAGCAGGATACTAACATTAAGCCGGACAAAATCCCAAGATGCTCAAAAGATTTTGGAATTTCATATAAGAGAAGATTTCAAGAATATCATACACATCATACTGATACAAATGCAGAAGGGGAAAAAGATGTTATGGAATGTTTAAAGGAGACACCCAATCACCCATGTAAGAAAGGATTTGAGCCAAAAAAGCTTGCTGTCAAAAACAAGAAATGGGAACTTGAAGATGCTTTCTTGATTGACGAGTTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACGAAGAACAGGAGCAGAGCTGGTAGAATCGAGAACACAACGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCATTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTACCCTGATCTGTCTATAGAAGAAGTTACTGAAAGTTGCCCATTTTGCCTTAAAAATTGCAATTGCAATGTCTGCCTGCGCACTAAAGGAACAATTAAGACATCTAACATGGCTGTAACCAATTACGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAATATTCAAGGAAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGACAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATTGACCTTCATCGGAGCTGCCCCAACTGTTCCTACGAGCTTTGCCTTAAATGTTGCCAAGAAATACGCGATGGAAGCATTACTGCCCGGGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGATTTCAGATGGTAATCTTGAGGTATCTACCAAGTGGAATGCCAAGAGTGATGGAAGTGTTAGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAAGCGCATCCTCCCCCATGGGTGGATGTCTGACTTGGAAGGAAAAGCTCATGACATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCAGCAGGAAGAAGTTGGATCCAACTACAACTCTATGAGAAAGGAATCCTTCACAGAAGGCACAAATGAGAGTAACATATGCTGTTCAGAGGCAAGAGACATTTTGAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGCATTGTGTGATAACGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAAATGCTCAAGCTAAAAGATTGGCCCCCTTCTGATAAATTCGAAGATCTTTTGCCTCGTCATTGTGATGAATTTATTCGTTTCTTGCCATTTCAACAGTACACTGATCCTCGGGCTGGAATACTTAACCTGGCTGTGAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATACATTGCTTATGGAATTACAGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCCGAGGTATCATTAACTGATGAGCAACACGCTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGCGCTCCAGACTGGGCTGCTGTATGCCTAAATGGTCGACCTTGCGATGACAGAGAACGTATAGAAAATAAGGAAGCATTAGAATGCAAAAATACGGATAACTGTCCTACTGTAATCAGTGGGGATATCTTTCAAAATGATGTGTCTGAGGGGGACACTTTTCCTGCTACTTGTACAGAAAATGAAACTACGGTAACAAGTAGTGCTTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCAAAAGAATTCAGGCATACTTACTGTTCACCGGTCGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCGTGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAACCATAAAGTTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGATCAAGCTGTGAAAGACCTAAAAGCTTTACTTGATTGTTCTTGA 2736 0.4031 MEVVVPTQEQPNQHTEDNLKFSGCSKPFGNSKRKAEEECGDNEKREKEPEGEQNTMGCLKEAIVAQEEQLKQDTNIKPDKIPRCSKDFGISYKRRFQEYHTHHTDTNAEGEKDVMECLKETPNHPCKKGFEPKKLAVKNKKWELEDAFLIDEFEQDEEMFFLLKTKNRSRAGRIENTTGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDLSIEEVTESCPFCLKNCNCNVCLRTKGTIKTSNMAVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEANIQGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRDGSITARAEMKFQYVNRGYDYMHGGDPLPVSCDLEISDGNLEVSTKWNAKSDGSVSCVPKEMGGCGSSVLELKRILPHGWMSDLEGKAHDMLKIWEVEQKTFQQEEVGSNYNSMRKESFTEGTNESNICCSEARDILRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHATISKLKEAHKAQDEREHCAPDWAAVCLNGRPCDDRERIENKEALECKNTDNCPTVISGDIFQNDVSEGDTFPATCTENETTVTSSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVRECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05567 911 SMART cupin_9 588 874 IPR003347 -
Trre15g05567 911 MobiDBLite consensus disorder prediction 30 54 - -
Trre15g05567 911 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g05567 911 SUPERFAMILY Clavaminate synthase-like 488 910 - -
Trre15g05567 911 ProSiteProfiles JmjC domain profile. 607 874 IPR003347 -
Trre15g05567 911 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 182 255 IPR018866 -
Trre15g05567 911 Gene3D Cupin 470 883 - -
Trre15g05567 911 ProSiteProfiles Zinc finger RING-type profile. 187 232 IPR001841 -
Trre15g05567 911 Pfam JmjC domain, hydroxylase 745 857 IPR003347 -
Trre15g05567 911 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 907 IPR045109 GO:0032454|GO:0033169
Trre15g05567 911 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05567 Trre-Chr15 64154637 64159271 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre15g05567 JmjC 4.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05567 K15601 K21989 gmx:100797860 1277.69