Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05561 ATGTTAACATTTCCGATGAATCTCACTAATTGGTCTGATGTTAATGATAATGATAATAATGATGATGATCAACGGAGAATTAATCGTGTAATTGTTGATGAAGTTGATTTCTTCTCAGATAGAAATGATAAATCATCGTCGCCTGATGATCATGTTTCCATCAAGATCAATGATGAGATTTACGATCCTCATTGCAATCTCGCCGCTGACCATGTCAACACTGGCTTACAACTCCTGATTAGTAATACCGGAAGTGATCAATCAACGGCAGATGATTTATCTTTAATAAATGCTGAAGATAAGCGTGCTAAGACTGCTCAGGTGGAGCAATTGCAAGAGGAGCTTCGATTTAAGAATGAAGAGAACCAAAAGCTGAAGGAAATGCTGAACACCATGAGAAGTAGCCACACAAACTTGCAAATGCGTTATGTCGCCTTGATGCAACAGAAACAGAACCAACGTACCACAGAACATGAACAGATTGGCCAAGGAAAAGCTGAGGAGAAAGGAGATAGTGTGATGGCTAGAAACTTCATGAGTGGCACAGCAGAAGCAGATGATCAGCAAGTATCAAACTCTTCTAATTCAGATGAAAAAACTCGATCGAGCACGCCCCAGAACAATCAGAAATTAGAGACTGATCGAGACTCATCAGAACTAGTACAAGTTTGGGACCCAATTAAGCGTCCTGCGTTAAACCCACCCAACACCGTTGATCAATCTGCTGCTGAAGCCACTATGAGAAAAGCACGTGTCTCCGTCCGTGCCCGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGCACAATGGCTATGGGTTGTCCTGTTCGCAAACAAGTTCAGCGTTGTGCCGAGGACAGAACAATTCTCATAACAACATATGAAGGGACGCATAGCCATCCTCTGCCACCTGCCGCTGTGGCAATGGCATCGACCACTGCAGCAGCTGCTACCGTATTACTATCTGGTTCAATGTCAAGTGCTGATGGGGTGATCAATCCCAACATACTAGCCAGAATTCTTCCTAATTGCTCTTCTAGCATGGCCACACTCTCAGCATCAGCACCATTTCCCACCGTGACACTAGACCTTACACGCGACGCTACAGATAATAACCAAAATTCGCATTCTCAATTCCAGCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAAGTAATTGCACAAGCACTTTATAACACATCCAAATTCTCTGGCCTTCAATTGTCTCAGGATGTTGGGGGATCTTCCCAATTGAATCATACTCAACAAGCATCATCACTCAGTGCTGCCATCACTTCGGATCCAAACTTCACTGCAGCACTCGCTGCGGCTATCTCCTCCTTAATTGGCGCTGCTCCTCCCAATAATAACAACAACAACAATCCCAATATCATCAACAGTTCTACCTACAATCAGTAG 1491 0.4366 MLTFPMNLTNWSDVNDNDNNDDDQRRINRVIVDEVDFFSDRNDKSSSPDDHVSIKINDEIYDPHCNLAADHVNTGLQLLISNTGSDQSTADDLSLINAEDKRAKTAQVEQLQEELRFKNEENQKLKEMLNTMRSSHTNLQMRYVALMQQKQNQRTTEHEQIGQGKAEEKGDSVMARNFMSGTAEADDQQVSNSSNSDEKTRSSTPQNNQKLETDRDSSELVQVWDPIKRPALNPPNTVDQSAAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAMGCPVRKQVQRCAEDRTILITTYEGTHSHPLPPAAVAMASTTAAAATVLLSGSMSSADGVINPNILARILPNCSSSMATLSASAPFPTVTLDLTRDATDNNQNSHSQFQLGQPQNFGSGQLPQVIAQALYNTSKFSGLQLSQDVGGSSQLNHTQQASSLSAAITSDPNFTAALAAAISSLIGAAPPNNNNNNNPNIINSSTYNQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05561 496 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05561 496 MobiDBLite consensus disorder prediction 475 496 - -
Trre15g05561 496 MobiDBLite consensus disorder prediction 1 15 - -
Trre15g05561 496 MobiDBLite consensus disorder prediction 149 246 - -
Trre15g05561 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 91 485 IPR044810 GO:0003700
Trre15g05561 496 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05561 496 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05561 496 MobiDBLite consensus disorder prediction 182 211 - -
Trre15g05561 496 FunFam probable WRKY transcription factor 31 248 325 - -
Trre15g05561 496 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05561 496 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05561 496 Coils Coil 101 135 - -
Trre15g05561 496 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05561 Trre-Chr15 64110217 64112585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05561 2 487 WRKY Transcription Factor Family AT1G62300 50.000 1.83e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g05561 WRKY 6.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05561 - - mtr:11439068 662.144