Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05532 ATGGGTTGTCACGGTAGCAAGGAAGAGAAGAAATCCGCCACTGAAGACTATAGCCGCCACCGCCATCGATCATCCACCACACCTGCTGCCGCTGCTTCCGCTACTAATTTCCAGTATCAAATTGTTCAACCTTCTTCCTCCCACGTTCAAACTTCACCACCACCACCTAAACCAGAATCACACTCACATTCACAACCTTCAACAGTCACTACAACAACAACAACAACATCAAATCCAAAACCCTCTTCCTCTACAACTGTCACTGCCACGTCACAGAATGTGAGAACAGTGCAGAAAACAACAGACACAACAACCATATTAGGAAAACCCTTTGAAGATATTAAAAAGTTCTATACTTTAGGTAAAGAACTAGGTAGAGGACAATTTGGGATTACTTATTTTTGCACTGAGAATTCAACTGGTTTAAATTATGCTTGTAAATCTATATTAAAGAGGAAGCTTGTTTCTAAAGCTGATAGAGAAGATATTAAGAGAGAGATTCAGATTTTGCAGCATTTATCTGGCCAACCAAATATTGTTGAATTCAAAGGTGCTTTTGAGGATAGGTTTTCTGTTCATCTTGTTATGGAACTTTGTGCTGGTGGAGAGTTATTTGATAAAATCATTGCTCAGGGTCATTATTCTGAGAGAGCTGCTGCTTCTATTTGTAGAGATGTTGTTAATGTTGTTCATATTTGTCATTTCATGGGTGTATTGCATCGCGATTTAAAGCCCGAGAATTTCTTGCTTTCTAGTAAGGATGCTGGAGCTGCACTCAAAGCTACTGATTTTGGACTTTCTGTCTTCATTGAAGAGGGAAAGGTTTACCGTGATATGGTAGGAAGTGCTTACTATGTTGCTCCTGAGGTACTACGTCGTAGTTATGGAAAGGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTCCTTAGTGGTGTACCACCTTTTTGGGCGGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAACTTGACTTTGTTAGTGAACCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGAAAGATGCTGACGCAGGATCCAAAGAAGAGGATTACTTCTACCCAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAGGCTTCTGATAAACCAATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGTTCAAGAAACTTGCATTAAAGGTTATGGCTGAAAGTCTATCAGAAGAAGAGATTAAAGGTCTCAAGGCAATGTTTGCAAATATGGACACTGATGGTAGTGGCACCATCACCTATGAAGAACTGAAGTCAGGCCTTGCACGAATTGGATCACGATTGTCTGAGCCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTTGATGGAAATGGCTCAATCGACTATCTTGAATTCATATCGGCTACAATGCATAGGCACAGACTTGAACGAGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAAGACAATAGCGGGCATATCACTAGAGAAGAATTGGAGACTGCCATGACAAAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATTATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCTATGATGAGAAGCGGATTGCCACACCAGGCACAACTATTTTAA 1701 0.4015 MGCHGSKEEKKSATEDYSRHRHRSSTTPAAAASATNFQYQIVQPSSSHVQTSPPPPKPESHSHSQPSTVTTTTTTTSNPKPSSSTTVTATSQNVRTVQKTTDTTTILGKPFEDIKKFYTLGKELGRGQFGITYFCTENSTGLNYACKSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGAFEDRFSVHLVMELCAGGELFDKIIAQGHYSERAAASICRDVVNVVHICHFMGVLHRDLKPENFLLSSKDAGAALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSTQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKFKKLALKVMAESLSEEEIKGLKAMFANMDTDGSGTITYEELKSGLARIGSRLSEPEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITREELETAMTKHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGLPHQAQLF 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05532 566 MobiDBLite consensus disorder prediction 1 98 - -
Trre15g05532 566 FunFam Calcium-dependent protein kinase 1 384 559 - -
Trre15g05532 566 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Trre15g05532 566 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Trre15g05532 566 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Trre15g05532 566 CDD EFh 498 556 IPR002048 GO:0005509
Trre15g05532 566 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05532 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 551 - -
Trre15g05532 566 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Trre15g05532 566 MobiDBLite consensus disorder prediction 24 48 - -
Trre15g05532 566 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g05532 566 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05532 566 Pfam Protein kinase domain 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05532 566 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Trre15g05532 566 Gene3D - 384 558 - -
Trre15g05532 566 ProSiteProfiles EF-hand calcium-binding domain profile. 527 561 IPR002048 GO:0005509
Trre15g05532 566 SMART efh_1 423 451 IPR002048 GO:0005509
Trre15g05532 566 SMART efh_1 530 558 IPR002048 GO:0005509
Trre15g05532 566 SMART efh_1 495 523 IPR002048 GO:0005509
Trre15g05532 566 SMART efh_1 459 487 IPR002048 GO:0005509
Trre15g05532 566 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Trre15g05532 566 FunFam calcium-dependent protein kinase 1 204 383 - -
Trre15g05532 566 CDD STKc_CAMK 117 375 - -
Trre15g05532 566 Gene3D Transferase(Phosphotransferase) domain 1 204 383 - -
Trre15g05532 566 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Trre15g05532 566 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Trre15g05532 566 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Trre15g05532 566 Pfam EF-hand domain pair 494 556 IPR002048 GO:0005509
Trre15g05532 566 Pfam EF-hand domain pair 424 484 IPR002048 GO:0005509
Trre15g05532 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Trre15g05532 566 MobiDBLite consensus disorder prediction 62 98 - -
Trre15g05532 566 FunFam Calcium-dependent protein kinase 1 120 203 - -
Trre15g05532 566 SUPERFAMILY EF-hand 416 555 IPR011992 -
Trre15g05532 566 SUPERFAMILY Protein kinase-like (PK-like) 117 384 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05532 Trre-Chr15 63885934 63890216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05532 42 558 EF-hand Containing Proteins AT4G04720 76.731 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre15g05532 Pkinase 4.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05532 K13412 - gmx:100816859 875.159