Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05523 ATGATGCAACCAGGAGGACCTGGCATGGCTCCACACGCCATCGCTCAACAATACCAACAGCAACAACAACAACAACAACAACAACAACCCTACATGATGATGCCTCCTCAACCTCAACCTCAGACCCAACCTCCTCAGATGTGGGCCCCTAATGCTCAACCTCCTCCTCAATCGGCTCCTCCTCAACAACAGCCTCAACCTGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTGCAATACTGGATGGACGAGAACTATCTTTATCAATGTTTCTCTCACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGGAACAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTACTAGTCGTGCTGGTGCGGAGAGAGTTCTTCAAAACTATAATGGCACCATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCATGACGATTCTCCAGATTACACTATATTTGTTGGAGACTTGGCTGCTGATGTTACTGATTATCATCTGACTGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGTGCTAAAGTTGTAATTGATAGGACTACTGGAAGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGGGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTAACACACAGTCGTCAAAAGCTTCATATCAGAATCCTCAAGGGGGGGCACAGAACGAGAACGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAGACAAGTTTTTGTGCAGTATGGAGAACTTGTTCATGTTAAGATTCCATCAGGCAAGAGATGCGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAGGAGGCACTGCGTGTTTTAAACGGTACACTTCTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTAGCAGTGGATACTTTGGATATCCTCAGGGTTATGAAAATTATGCTTATGCCCCTGCAGCTGGACAGGACCCCAATATGTATGGCAGTTATCCAGCGGGGTATGCAAATTACCAACCCCCTCAGCAACAACAGCAAATAGGATACAGTTAA 1233 0.4542 MMQPGGPGMAPHAIAQQYQQQQQQQQQQQPYMMMPPQPQPQTQPPQMWAPNAQPPPQSAPPQQQPQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFTSRAGAERVLQNYNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPASNKNLNTQSSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFVQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNMYGSYPAGYANYQPPQQQQQIGYS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05523 410 SUPERFAMILY RNA-binding domain, RBD 260 371 IPR035979 GO:0003676
Trre15g05523 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Trre15g05523 410 Gene3D - 73 153 IPR012677 -
Trre15g05523 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Trre15g05523 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 350 - -
Trre15g05523 410 MobiDBLite consensus disorder prediction 1 71 - -
Trre15g05523 410 SMART rrm1_1 75 150 IPR000504 GO:0003723
Trre15g05523 410 SMART rrm1_1 168 242 IPR000504 GO:0003723
Trre15g05523 410 SMART rrm1_1 275 342 IPR000504 GO:0003723
Trre15g05523 410 FunFam Polyadenylate-binding protein RBP45C 159 250 - -
Trre15g05523 410 MobiDBLite consensus disorder prediction 396 410 - -
Trre15g05523 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 346 IPR000504 GO:0003723
Trre15g05523 410 MobiDBLite consensus disorder prediction 389 410 - -
Trre15g05523 410 MobiDBLite consensus disorder prediction 242 274 - -
Trre15g05523 410 Gene3D - 154 253 IPR012677 -
Trre15g05523 410 MobiDBLite consensus disorder prediction 33 63 - -
Trre15g05523 410 SUPERFAMILY RNA-binding domain, RBD 73 250 IPR035979 GO:0003676
Trre15g05523 410 MobiDBLite consensus disorder prediction 14 32 - -
Trre15g05523 410 FunFam Polyadenylate-binding protein RBP45C 251 356 - -
Trre15g05523 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 232 IPR000504 GO:0003723
Trre15g05523 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 339 IPR000504 GO:0003723
Trre15g05523 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 141 IPR000504 GO:0003723
Trre15g05523 410 Gene3D - 254 355 IPR012677 -
Trre15g05523 410 SUPERFAMILY beta-sandwich domain of Sec23/24 4 84 - -
Trre15g05523 410 FunFam Polyadenylate-binding protein RBP45 6 158 - -
Trre15g05523 410 CDD RRM1_SECp43_like 75 155 - -
Trre15g05523 410 CDD RRM2_SECp43_like 166 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05523 Trre-Chr15 63823185 63826755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05523 73 353 Eukaryotic Initiation Factors Gene Family AT2G23350 27.622 8.31e-29 117