Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05520 ATGGGTCGTTCAAAAATAACTATGAGATATATCCAAAATGAGAATTCCCGGAAACATTCTTTCAATCAGAGAAAAAAAGGAATAAGATCAAAAATATCCAAAATTACTAAGTCTGGAGCAAAAATTTGTTTGGTCATGTACGATGGAAATAATGCAGGACCAATAACGTGGCCCGAAGACCTTGCAATTGTAAACACCATGCTTCAAGAATATGAGCACCAAAAGATCGAGAAAACTCCTAATATATTTCAGATCGATGACTACTTTAAAATTAAGAAAGATATAGTTAAAGCTGAGATTACCAAAGTGCGTAAAGATATCCTCAACATCAAGTATCCAACTTGGCATCCGCATTTTAATAACATGGATGAGAATCAACTCAAAAACTTCCTTGCTTCTATAGATGTTAAGATTAGAACTTGTAATCTCAAAATTAACACACTAAAAAGTAATGATGAAGCCACTTAG 468 0.3312 MGRSKITMRYIQNENSRKHSFNQRKKGIRSKISKITKSGAKICLVMYDGNNAGPITWPEDLAIVNTMLQEYEHQKIEKTPNIFQIDDYFKIKKDIVKAEITKVRKDILNIKYPTWHPHFNNMDENQLKNFLASIDVKIRTCNLKINTLKSNDEAT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05520 155 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Trre15g05520 155 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Trre15g05520 155 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05520 Trre-Chr15 63806487 63806954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05520 1 139 Type I MADS-box Gene Family AT5G55690 26.027 3.96e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g05520 SRF-TF 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05520 - - tpra:123904711 240.35