Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05518 ATGGATTACACCAATTCCCCCCTTCATATAGAGGCTGCTGCTCAACGGAAGCCCACCCCTATCCGTAAGGTTGTCGCAGTGGCTTCTATAGGCGCCGGTATACAATTCGGGTGGGCCCTACAGCTCTCTCTACTCACACCCTACATCCAGCTACTCGGAGTACCACACAAATGGGCAGGCAACATTTGGCTATGCGGCCCCATTTCCGGCCTGATCGTTCAGCCGATCGTCGGCTACTACAGTGACCGAAGTTATTCACGTTTTGGTCGCCGCCGCCCTTACATCTTCTTTGGCGCTATATTTGTCGCCATTGCCGTCTTTTTCATTGGCTTTGCTGCAGATCTTGGTCACGCCTTAGGCGATGACCTAACCCAAAAGACACGTACCCGTGCTGTTGTCATCTTTATCGTAGGCTTCTGGATAATAGATGTCGCCAACAATATGCTTCAAGGACCATGTCGTGCCTTTATTGGCGACCTCGCGGACGGTGATCACAGTCGAATGAGAATCGGTAATTCTTTGTTCTCTTTCTTCATAGCCATCGGTAATATCCTTGGTTATACTGCTGGCTCTATAAGCAAACTCCACCAAATCTTGCCTTTTACCGAAACCAAAGCATGTGATGTCTTTTGTGCCGATCTCAAAACATGTTTCATTTTCTCAATTTTCCTTCTCGCCATGGTTTCTACCTTCGCTTTACTTTATGTGGAAGACATCCCGCTACAAAAACAACCAGAAATTCGATTAGCACCAGAGGGTGACCGCGGCTGCCTTGCAGAGTTGAAAGATGCATTTCACGGACTGAGTAAACAGATGTGGATGTTGTTGTTAGTAACAGCTATTAATTGGATAGCATGGTTCCCATTCTTCTTGTACAACACCGATTGGATGGGCCACGAAGTATATGGTGGAAAAACGGGAGAAGATGCTTATGCCGCCGGTGTACGTGCTGGAACATTGGGGCTTGGAGTGCAAGCAGGTGTGCTTGCGATAATGTCGTTGGCAGTTGAGCCGTTGAGCCGTTTTATTGGTGGAGCTAAGAGGCTGTGGGGAATTGTGAACATTATCCTTGCTATTGCACTTGCTATGACGATTGTCATCACCAAGGCAGCGGAACATGCACGGCAGGGTACTACCGGAGGGACGCCGCCCGAAGGTATTAAGGTTGCCGCATTCGGTTTCTTCGCCATCGTTGGAATCCCTCTTGCGATTAATTTCAGTATTCCATTTGCTTTAGCATCTATTTATTCCAGCTCAACAGGGGCCGGGCAAGGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTCATTCCACAGATGATAGTAGCGTCAGCAGGTGGACCGTTTGATGCTTTGTTTGGTGGCGGTAACTTGCCCATGTTTACGGTGGGCGCCGTGGCAGCAGTGATCAGCGGTGTATTGGCAATCGTCCTTCTGCCTACCCCAAAGTCGGTTGATATGGCCAAGGCCAAGGCTTCAGTTGTCCCTGGTGGTTTACATTAA 1503 0.4877 MDYTNSPLHIEAAAQRKPTPIRKVVAVASIGAGIQFGWALQLSLLTPYIQLLGVPHKWAGNIWLCGPISGLIVQPIVGYYSDRSYSRFGRRRPYIFFGAIFVAIAVFFIGFAADLGHALGDDLTQKTRTRAVVIFIVGFWIIDVANNMLQGPCRAFIGDLADGDHSRMRIGNSLFSFFIAIGNILGYTAGSISKLHQILPFTETKACDVFCADLKTCFIFSIFLLAMVSTFALLYVEDIPLQKQPEIRLAPEGDRGCLAELKDAFHGLSKQMWMLLLVTAINWIAWFPFFLYNTDWMGHEVYGGKTGEDAYAAGVRAGTLGLGVQAGVLAIMSLAVEPLSRFIGGAKRLWGIVNIILAIALAMTIVITKAAEHARQGTTGGTPPEGIKVAAFGFFAIVGIPLAINFSIPFALASIYSSSTGAGQGLSLGVLNLAIVIPQMIVASAGGPFDALFGGGNLPMFTVGAVAAVISGVLAIVLLPTPKSVDMAKAKASVVPGGLH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05518 500 NCBIfam sucrose/proton symporter 20 483 IPR005989 GO:0005886|GO:0008515|GO:0015770
Trre15g05518 500 Gene3D MFS general substrate transporter like domains 17 479 IPR036259 -
Trre15g05518 500 SUPERFAMILY MFS general substrate transporter 22 485 IPR036259 -
Trre15g05518 500 CDD MFS_SLC45_SUC 25 476 - -
Trre15g05518 500 PANTHER SUGAR TRANSPORTER 20 478 - -
Trre15g05518 500 Pfam MFS/sugar transport protein 36 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05518 Trre-Chr15 63790801 63795073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05518 17 482 Sucrose Transporter Gene Family AT1G71890 60.000 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05518 K15378 - gmx:100784153 638.647