Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05497 ATGGTTTTGGAGGATCGTTTAGTGAGTGATGATGTTTGTGGTGACGATTTTCCTGTCGGTATGCGTGTTCTGGCTGTCGATGATGATCGGACTTGTCTCAAGTTGTTGGAGAATTTGCTTCGCAAATGCAAATATAATGTTACTACAACTACAGAAGCGGTGAAGGCACTAGAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATTAGTGATGTAAATATGCCAGAAATGGATGGATTTAAGCTCCTTAAGCAAGTTGGACTTGAAATGGATGTACCATTTATCATGTTGTCAGGAAATGGCGATAAAGAGAGAGTGATGAAAGGTGTGATACACGGCGCTTGTGACTATCTAATGAAACCGATCCGAATGGAAGAGCTGCAGAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGCAAGGATCAGAATAAAGGTACTGTTGCTGATGAGGAGAAAATCAGCAATGTGGCTGGGGTATCTAGTCAAGACACCACATCTGAAAATATTGCTAACAAGAATCAAGTCCGGGGACCAAAAAGAAAAGAACTAAGCGAGGAAGAAGAAGAAGATGATGAAGAAGAGGAATCGGAAGAAGATAATGATGAAGAGAATGATGAGCAACGCTCGACTCGGAAGAAGCCTCGTTTCATTTGGGATAACGACTTGCATAAAAAATTTGTTTCTGTAGTTAGTCAACTGGGCCTTGAGAAGGCTTATCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTAGCTAGCCATCTGCAGAAATACAGACTTAGTCTCAAAAGACCAACTAAACAGGCTAGAGTAGATGCTGCATTGGATACTCACCCACAAATGGGTTCAGTAAGTGGGTATGGAGATTTTTCCACCTTGTCTGGATCAAGAAGAACCTTAAGCAGCACATTGCCATCATATGCATCTAGTGACATATATAGTCGGCGGCTAAACACACCATCTAGGTTGAACTTGAGAGGAATTAGTCCTTCTGCACCGGTCCTTGCGCTTCAATCTCCAAACTTTAACAGTTTCAAGCGGCCGATGTTTTCTGCAAAAGAAAGCTCAAGTTTTTTACAGGGCATCCGAACATCAATGTCGATGAACCAGTTTCAGCAAAACAGTTATCCAACGGGTAATATGAAGTTAAATCCAATTGATGATTCAAGTGCATTTACAGCTTCCACTAGCTTTCAAAATATAAGAGCTACTGTTAATAATGCAAATAGTTATCTTTCTTGCATCCCAAGCAATCACCTTCTAGCACATAATTCAGGACCGTTCATAAATCAGTCTTCTGTTGGAGGTGCTGCTGTGAAAACAGAACCTTTTAACCCTGCCACAAGCAGTTCCTCTAATTCATTAGATTATAATCGGATCAGCGAAAGCTGGAAGAGTTCAGCTCAGTTTTCTAACTTTGCTACCAATTCTTCTCCATTGAGTGGGGATTTTAACAATGGTCAAATGTCTCACAATAGCTTAAAGTTTGCCTCTCCCAGTACTCATTTTAAGCAAACTCCAGTTGATTTTGCTTCGACGTGCGCCGTTGCTGTTCCTTCGGAGGAAGCAATTCAATGTCAAGATGGATTACTTGACAGTGTCGTAAAGGCTGCATGTTACACGCAACCGCAAAATGCGGGTTCTACCTTCAACAATACCTTGGATTCTCTAGCTTCTCCTAATGGAGACAATAGTCCCATGGTACATAGTTTAGCCCAAACTAATAGTGTATCAACTACTCAGATGCCTGAAGTTGAGAAATTTTATTCAGATACAAAAGTGGAATCAAATGGTGATTGCTTTTTTGAGCAAATGCTTTCTCTAGAAGGATTCATTCAGAATAGTTGTGTATCCTTGGATGACACAATTAGTGAAAGGATCAAATAG 1917 0.4022 MVLEDRLVSDDVCGDDFPVGMRVLAVDDDRTCLKLLENLLRKCKYNVTTTTEAVKALEMLRENRNKFDLVISDVNMPEMDGFKLLKQVGLEMDVPFIMLSGNGDKERVMKGVIHGACDYLMKPIRMEELQNIWQHVVRKKIESKDQNKGTVADEEKISNVAGVSSQDTTSENIANKNQVRGPKRKELSEEEEEDDEEEESEEDNDEENDEQRSTRKKPRFIWDNDLHKKFVSVVSQLGLEKAYPKKILDLMNVEGLTRENVASHLQKYRLSLKRPTKQARVDAALDTHPQMGSVSGYGDFSTLSGSRRTLSSTLPSYASSDIYSRRLNTPSRLNLRGISPSAPVLALQSPNFNSFKRPMFSAKESSSFLQGIRTSMSMNQFQQNSYPTGNMKLNPIDDSSAFTASTSFQNIRATVNNANSYLSCIPSNHLLAHNSGPFINQSSVGGAAVKTEPFNPATSSSSNSLDYNRISESWKSSAQFSNFATNSSPLSGDFNNGQMSHNSLKFASPSTHFKQTPVDFASTCAVAVPSEEAIQCQDGLLDSVVKAACYTQPQNAGSTFNNTLDSLASPNGDNSPMVHSLAQTNSVSTTQMPEVEKFYSDTKVESNGDCFFEQMLSLEGFIQNSCVSLDDTISERIK 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05497 638 FunFam Two-component response regulator 213 276 - -
Trre15g05497 638 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677
Trre15g05497 638 Gene3D - 217 274 - -
Trre15g05497 638 Coils Coil 184 210 - -
Trre15g05497 638 PIRSF RR_ARR_type-B 4 632 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre15g05497 638 SUPERFAMILY CheY-like 20 143 IPR011006 -
Trre15g05497 638 MobiDBLite consensus disorder prediction 189 208 - -
Trre15g05497 638 CDD REC_typeB_ARR-like 23 137 - -
Trre15g05497 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 390 IPR045279 GO:0009736
Trre15g05497 638 SMART REC_2 21 133 IPR001789 GO:0000160
Trre15g05497 638 Pfam Myb-like DNA-binding domain 222 269 IPR001005 -
Trre15g05497 638 MobiDBLite consensus disorder prediction 143 215 - -
Trre15g05497 638 MobiDBLite consensus disorder prediction 159 177 - -
Trre15g05497 638 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Trre15g05497 638 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Trre15g05497 638 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Trre15g05497 638 Gene3D - 21 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05497 Trre-Chr15 63683700 63686367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05497 15 418 Response Regulator Gene Family AT2G25180 45.933 2.84e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre15g05497 Response_reg 4.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05497 - K14491 tpra:123909856 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05497 15 63683700 63686367 Trre15g05497 15 63683700 63686367 ECH