Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05496 ATGATGGTTTTGGAGGATCGTTTAGTGAGTGATGATGTTTGTGGTGACGATTTTCCTGTCGGTATGCGTGTTCTGGCTGTCGATGATGATCGGACTTGTCTCAAGTTGTTGGAGAATTTGCTTCGCAAATGCAAATATAATGTTACTACAACTACAGAAGCGGTGAAGGCACTAGAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATTAGTGATGTAAATATGCCAGAAATGGATGGATTTAAGCTCCTTAAGCAAGTTGGACTTGAAATGGATGTACCATTTATCATGTTGTCAGGAAATGGCGATAAAGAGAGAGTGATGAAAGGTGTGATACACGGCGCTTGTGACTATCTAATGAAACCGATCCGAATGGAAGAGCTGCAGAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGCAAGGATCAGAATAAAGGTACTGTTGCTGATGAGGAGAAAATCAGCAATGTGGCTGGGGTATCTAGTCAAGACACCACATCTGAAAATATTGCTAACAAGAATCAAGTCCGGGGACCAAAAAGAAAAGAACTAAGCGAGGAAGAAGAAGAAGATGATGAAGAAGAGGAATCGGAAGAAGATAATGATGAAGAGAATGATGAGCAACGCTCGACTCGGAAGAAGCCTCGTTTCATTTGGGATAACGACTTGCATAAAAAATTTGTTTCTGTAGTTAGTCAACTGGGCCTTGAGAAGGCTTATCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTAGCTAGCCATCTGCAGAAATACAGACTTAGTCTCAAAAGACCAACTAAACAGGCTAGAGTAGATGCTGCATTGGATACTCACCCACAAATGGGTTCAGTAAGTGGGTATGGAGATTTTTCCACCTTGTCTGGATCAAGAAGAACCTTAAGCAGCACATTGCCATCATATGCATCTAGTGACATATATAGTCGGCGGCTAAACACACCATCTAGGTTGAACTTGAGAGGAATTAGTCCTTCTGCACCGGTCCTTGCGCTTCAATCTCCAAACTTTAACAGTTTCAAGCGGCCGATGTTTTCTGCAAAAGAAAGCTCAAGTTTTTTACAGGGCATCCGAACATCAATGTCGATGAACCAGTTTCAGCAAAACAGTTATCCAACGGGTAATATGAAGTTAAATCCAATTGATGATTCAAGTGCATTTACAGCTTCCACTAGCTTTCAAAATATAAGAGCTACTGTTAATAATGCAAATAGTTATCTTTCTTGCATCCCAAGCAATCACCTTCTAGCACATAATTCAGGACCGTTCATAAATCAGTCTTCTGTTGGAGGTGCTGCTGTGAAAACAGAACCTTTTAACCCTGCCACAAGCAGTTCCTCTAATTCATTAGATTATAATCGGATCAGCGAAAGCTGGAAGAGTTCAGCTCAGTTTTCTAACTTTGCTACCAATTCTTCTCCATTGAGTGGGGATTTTAACAATGGTCAAATGTCTCACAATAGCTTAAAGTTTGCCTCTCCCAGTACTCATTTTAAGCAAACTCCAGTTGATTTTGCTTCGACGTGCGCCGTTGCTGTTCCTTCGGAGGAAGCAATTCAATGTCAAGATGGATTACTTGACAGTGTCGTAAAGGCTGCATGTTACACGCAACCGCAAAATGCGGGTTCTACCTTCAACAATACCTTGGATTCTCTAGCTTCTCCTAATGGAGACAATAGTCCCATGGTACATAGTTTAGCCCAAACTAATAGTGTATCAACTACTCAGATGCCTGAAGTTGAGAAATTTTATTCAGATACAAAAGTGGAATCAAATGGTGATTGCTTTTTTGAGCAAATGCTTTCTCTAGAAGGATTCATTCAGAATAGTTGTGTATCCTTGGATGACACAATTAGTGAAAGGATCAAATAG 1920 0.4021 MMVLEDRLVSDDVCGDDFPVGMRVLAVDDDRTCLKLLENLLRKCKYNVTTTTEAVKALEMLRENRNKFDLVISDVNMPEMDGFKLLKQVGLEMDVPFIMLSGNGDKERVMKGVIHGACDYLMKPIRMEELQNIWQHVVRKKIESKDQNKGTVADEEKISNVAGVSSQDTTSENIANKNQVRGPKRKELSEEEEEDDEEEESEEDNDEENDEQRSTRKKPRFIWDNDLHKKFVSVVSQLGLEKAYPKKILDLMNVEGLTRENVASHLQKYRLSLKRPTKQARVDAALDTHPQMGSVSGYGDFSTLSGSRRTLSSTLPSYASSDIYSRRLNTPSRLNLRGISPSAPVLALQSPNFNSFKRPMFSAKESSSFLQGIRTSMSMNQFQQNSYPTGNMKLNPIDDSSAFTASTSFQNIRATVNNANSYLSCIPSNHLLAHNSGPFINQSSVGGAAVKTEPFNPATSSSSNSLDYNRISESWKSSAQFSNFATNSSPLSGDFNNGQMSHNSLKFASPSTHFKQTPVDFASTCAVAVPSEEAIQCQDGLLDSVVKAACYTQPQNAGSTFNNTLDSLASPNGDNSPMVHSLAQTNSVSTTQMPEVEKFYSDTKVESNGDCFFEQMLSLEGFIQNSCVSLDDTISERIK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05496 639 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Trre15g05496 639 MobiDBLite consensus disorder prediction 190 209 - -
Trre15g05496 639 CDD REC_typeB_ARR-like 24 138 - -
Trre15g05496 639 Pfam Myb-like DNA-binding domain 223 270 IPR001005 -
Trre15g05496 639 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Trre15g05496 639 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 271 IPR006447 GO:0003677
Trre15g05496 639 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Trre15g05496 639 SUPERFAMILY CheY-like 21 144 IPR011006 -
Trre15g05496 639 MobiDBLite consensus disorder prediction 144 216 - -
Trre15g05496 639 Coils Coil 185 211 - -
Trre15g05496 639 MobiDBLite consensus disorder prediction 160 178 - -
Trre15g05496 639 FunFam Two-component response regulator 214 277 - -
Trre15g05496 639 Gene3D - 218 275 - -
Trre15g05496 639 PIRSF RR_ARR_type-B 3 633 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre15g05496 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 391 IPR045279 GO:0009736
Trre15g05496 639 Gene3D - 22 217 - -
Trre15g05496 639 SMART REC_2 22 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05496 Trre-Chr15 63683700 63686370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05496 16 419 Response Regulator Gene Family AT2G25180 45.933 2.57e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre15g05496 Response_reg 4.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05496 - K14491 tpra:123909856 1029.24