Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05488 ATGTCTATTAGAAAACCCTCATTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCTCAGCAAATTCTCTCTCACGTGAATGTCTCTCTTCATGATGGAGGAGCATTTGTGCTAACAGGTGCAAATGGCTCAGGAAAGACAACTTTCATGCGCTTGCTAGCTGGATTTTCTCGTCCTTCTGCAGGTGAAGTCCTTTGGAATGGCCATGACATTCAAAAATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCCCTCAAGGATGCAATTAATGATAGGTTTAATGTTCTGGACAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCACTTGAGTTGATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAGGATGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATTGATCGCCCCATATGGATGCTAGATGAGCCTTCGGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGAAAACAGGGAGGAATTGTTATTGTAGCAACTCATTTACCCATTGAGATAGAAGATTCCATGGTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACATTCACAGATATGCTTGATCGGAGCGATATTAGTTAA 690 0.4319 MSIRKPSFPRLLLNNVSCMRNAQQILSHVNVSLHDGGAFVLTGANGSGKTTFMRLLAGFSRPSAGEVLWNGHDIQKSAIFHQYKLQLNWVSLKDAINDRFNVLDNIQWFELLEGKHGKAMPALELMGLGRLAKEKPRMLSMGQRKRLQLARMLAIDRPIWMLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDSMVLRLPPRFPRRMTFTDMLDRSDIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05488 229 Gene3D - 4 209 IPR027417 -
Trre15g05488 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Trre15g05488 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Trre15g05488 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Trre15g05488 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 8 223 IPR005895 GO:0017004|GO:0022857
Trre15g05488 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Trre15g05488 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05488 Trre-Chr15 63648988 63649677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05488 24 178 Calmodulin-binding Proteins AT2G36910 28.659 3.75e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05488 - - tpra:123910081 426.017