Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05485 ATGCAATCCCTAAACTCCCTTTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAATAACGACGCATTTCACAACGATGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACTCTTGACCCTAACAATCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTAACTTTCCCTAATTACGATGAACAACACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTCCACATGCCTCCTGACTTTGACTCCTCTCAAAACGACGTCGTTAACGCTTCCTCCCTTTTACAGGCTGGCGATGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTTCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGAGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGGTCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAGAGCCTCACAATGACAGAGCATCAGGTGGCAAAGTTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTATGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACCAGGAACCCTTTGATGAATGCTGCTGCTGCTGCTGTTAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGACGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1218 0.4926 MQSLNSLFNSSSSEIPIPLQQNHSQIQINNNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEQHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPPDFDSSQNDVVNASSLLQAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNAAAAAVNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05485 405 Gene3D - 199 266 IPR036638 GO:0046983
Trre15g05485 405 MobiDBLite consensus disorder prediction 161 188 - -
Trre15g05485 405 SMART finulus 208 257 IPR011598 GO:0046983
Trre15g05485 405 MobiDBLite consensus disorder prediction 288 307 - -
Trre15g05485 405 Pfam Helix-loop-helix DNA-binding domain 207 252 IPR011598 GO:0046983
Trre15g05485 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 346 - -
Trre15g05485 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Trre15g05485 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Trre15g05485 405 FunFam Transcription factor bHLH66 199 264 - -
Trre15g05485 405 MobiDBLite consensus disorder prediction 293 307 - -
Trre15g05485 405 MobiDBLite consensus disorder prediction 161 208 - -
Trre15g05485 405 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05485 Trre-Chr15 63623496 63626620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05485 188 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.661 3.84e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g05485 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05485 - - psat:127138414 608.216