Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05484 ATGCAATCCCTAAACTCCCTTTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAATAACGACGCATTTCACAACGATGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACTCTTGACCCTAACAATCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTAACTTTCCCTAATTACGATGAACAACACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTCCACATGCCTCCTGACTTTGACTCCTCTCAAAACGACGTCGTTAACGCTTCCTCCGCTGGCGATGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTTCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGAGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGGTCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAGAGCCTCACAATGACAGAGCATCAGGTGGCAAAGTTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTATGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACCAGGAACCCTTTGATGAATGCTGCTGCTGCTGCTGTTAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGACGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1209 0.4938 MQSLNSLFNSSSSEIPIPLQQNHSQIQINNNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEQHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPPDFDSSQNDVVNASSAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNAAAAAVNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05484 402 MobiDBLite consensus disorder prediction 158 204 - -
Trre15g05484 402 FunFam Transcription factor bHLH66 196 261 - -
Trre15g05484 402 Gene3D - 196 263 IPR036638 GO:0046983
Trre15g05484 402 MobiDBLite consensus disorder prediction 290 304 - -
Trre15g05484 402 MobiDBLite consensus disorder prediction 371 402 - -
Trre15g05484 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Trre15g05484 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 259 IPR036638 GO:0046983
Trre15g05484 402 MobiDBLite consensus disorder prediction 158 185 - -
Trre15g05484 402 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983
Trre15g05484 402 SMART finulus 205 254 IPR011598 GO:0046983
Trre15g05484 402 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 343 - -
Trre15g05484 402 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05484 Trre-Chr15 63623496 63626620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05484 185 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.661 2.49e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g05484 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05484 - - psat:127138414 597.816