Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05483 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTAAACTCCCTTTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAATAACGACGCATTTCACAACGATGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACTCTTGACCCTAACAATCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTAACTTTCCCTAATTACGATGAACAACACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTCCACATGCCTCCTGACTTTGACTCCTCTCAAAACGACGTCGTTAACGCTTCCTCCCTTTTACAGGCTGGCGATGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTTCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGAGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGGTCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAGAGCCTCACAATGACAGAGCATCAGGTGGCAAAGTTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTATGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACCAGGAACCCTTTGATGAATGCTGCTGCTGCTGCTGTTAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGACGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1239 0.4931 MQPCSREMQSLNSLFNSSSSEIPIPLQQNHSQIQINNNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEQHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPPDFDSSQNDVVNASSLLQAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNAAAAAVNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05483 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Trre15g05483 412 SMART finulus 215 264 IPR011598 GO:0046983
Trre15g05483 412 MobiDBLite consensus disorder prediction 168 215 - -
Trre15g05483 412 Gene3D - 206 273 IPR036638 GO:0046983
Trre15g05483 412 MobiDBLite consensus disorder prediction 381 412 - -
Trre15g05483 412 MobiDBLite consensus disorder prediction 300 314 - -
Trre15g05483 412 MobiDBLite consensus disorder prediction 168 195 - -
Trre15g05483 412 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983
Trre15g05483 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 353 - -
Trre15g05483 412 FunFam Transcription factor bHLH66 206 271 - -
Trre15g05483 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 269 IPR036638 GO:0046983
Trre15g05483 412 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05483 Trre-Chr15 63623496 63626641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05483 195 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.661 6.49e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g05483 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05483 - - psat:127138414 623.624