Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05482 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTAAACTCCCTTTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAATAACGACGCATTTCACAACGATGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACTCTTGACCCTAACAATCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTAACTTTCCCTAATTACGATGAACAACACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTCCACATGCCTCCTGACTTTGACTCCTCTCAAAACGACGTCGTTAACGCTTCCTCCGCTGGCGATGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTTCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGAGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGGTCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAGAGCCTCACAATGACAGAGCATCAGGTGGCAAAGTTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTATGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACCAGGAACCCTTTGATGAATGCTGCTGCTGCTGCTGTTAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGACGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATCGTCAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1230 0.4943 MQPCSREMQSLNSLFNSSSSEIPIPLQQNHSQIQINNNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEQHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPPDFDSSQNDVVNASSAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNAAAAAVNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05482 409 MobiDBLite consensus disorder prediction 297 311 - -
Trre15g05482 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Trre15g05482 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 350 - -
Trre15g05482 409 MobiDBLite consensus disorder prediction 165 192 - -
Trre15g05482 409 Pfam Helix-loop-helix DNA-binding domain 211 256 IPR011598 GO:0046983
Trre15g05482 409 FunFam Transcription factor bHLH66 203 268 - -
Trre15g05482 409 MobiDBLite consensus disorder prediction 292 311 - -
Trre15g05482 409 Gene3D - 203 270 IPR036638 GO:0046983
Trre15g05482 409 SMART finulus 212 261 IPR011598 GO:0046983
Trre15g05482 409 MobiDBLite consensus disorder prediction 165 211 - -
Trre15g05482 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
Trre15g05482 409 MobiDBLite consensus disorder prediction 378 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05482 Trre-Chr15 63623496 63626641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05482 192 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.661 5.71e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g05482 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05482 - - psat:127138414 613.224