Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05470 ATGGCTATGCTCCGCAAGTTGTTCTTTCGTAAGCCTCCTGACGGTCTTCTCGAGATCTGCGAAAGAGTTTACGTTTTTGATTGCTGTTTCACAACGGAAGCTTGGAATGAAGAGAAGTATAAAGTTTATGTGGATGGTATAGTAAGTCAGCTTAGAGAGAATGTGCCTGATGCTTCTCTTATGGTTTTCAATTTTCGCGAGGAAGAGACTAAAAGTTTGATGGCAAACGTAATGTCTGAGTATGACATTACTATAATGGACTATCCTAAGCACTATGAAGGTTGTCCTGTGCTTAAAATGGAGCTCATTCACCACTTTTTAAGGTCTAGTGAAAGCTGGCTCTCACTTGGTCAACACAATGTGTTGTTGATGCATTGTGAACGAGGTGCTTGGCCGATTTTGGCTTTTATGTTGGCTGCATTGTTGATTTATCGGAAGGTTTATACTGGGGAGAATAGGACTTTGGATATGGTTTATCGGCAGTCCCCCCACGAGCTTTTGCATTTGTTGACTCCGTTGAATCCACTCCCTTCACAATTGAGGTATCTGCAGTATATTTCCAGGAGGAATGTGGCCATAGATTGGCCTCCCCTTGACAGGGCACTCATGTTAGACTGTATCATTCTCAGATTCTTCCCAAACTTTGATGGGAAAGGTGGTTGCCATCCCTTGTTTAGAATTTACGGACAGGATCCTTTTAGTGCAGATAAAAGTCCTAAAATGTTGTATTCAATGCCAAAGAAAAGCAAAAATATACGGGCTTACAAGCAGGGAGAGTGCGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTAACTTGAATGATGATATGGAGCACGAGATGATGATGTTCCGAGTAATGTTCAACACAGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGATGTTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGAGCTGAGATTCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTACATCATGGTTTGAGGAGAAAGAGGGACTTCCGATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCAAAGGCTGATGCTGCACTAAATGTGCTCCAACATATAAATACTTCTGGTATCACGAATGACAAGCTGGATAAAGTTTCTGACCAGCACGTGGAAACTGCCACTTCAATGCATGAAATAGGTCCTAAAACACCTCAGAGGAATTCATATGAAGCGATACAGTCTTTGTCCTCAGCTAAGCATTCCCCAAATAATGATAAATGTGGAAAAGAGGACAAGACAAATAAACTAGCCAGTAAATGTCCAACAGGGTCAAAAAATATTGATATGAAACTGGAGGTATCCAATCCTGCTTCATCTGGTTCTCCAGATTCTTCTCTTACCCCTGGAACACCTCCTCTGCGGCCTCCCTCAACTACTAGTGCTAAAGAAGTTCATGACTCTCCTCCCCACACAGAATCACCTCCTCATCATATTTTTCCTCTGAAATCAGAACATCAACCACAAGACAGCAGTTATTCACCTATTTCTAGCCCGACACCTGGTACCCATCCTTCACTTTCAGCAGTTTCTTCAATTCAGCCATCCCCTCCACTTTCTTCCAAAACAACTTTGAATGACATTCCACCTGTCAAAACAAGACTCGAATCTCCCCCTTCACAACCTCCAACTCCACCTCCTCCCACCCCTCCATTAAAAGATCAGAAAGTAGTTAGAGCTGGACCCCCATCCCCACCACCTCCTCCAAAGAAGGAACTACATGTTAAAGCTGGACCTCCGCCTCCTGTTCCATCTCATATGAATGAGAAACCACATGTTAGAGATGGACATTCTCCTCCTCCTCCTCCTCCCCCCCCTCCTCTTACTCCATCACCTCCTCTAAACTCGGAGGAACCTTCTAGGTTTAAGCCCCCGCCGCCACCGCCACCACCTCATCTTTCAACGGGAGCTGCAAGTTCTACTATAGCACCGCCGGCACCGCCTGCACCACCTCCACCTGCAACACTTTCCTCTGGTAACCCTAATGCTTCAATGCAAACGTCTCCACCTGTTCCGCCACCTCCAATTCCTTTAGGCAAAGAAGGACTAAAACCAGGCAGTGCTTTTCCAATGTCTCTTAAGGTCCCAGGCACAGCAGGACCTCAATCTAAGGGACGAGTTCTACCAATTGGCTCAAAGAATAACGCCAAAAAGTTGAAGCCATTGCATTGGATGAAGCTATCTAGAGCAGTGCAAGGAAGTTTGTGGGACGAGACACAAAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATCTCAGAGCTCGAGCGTCTCTTCTCAGCAGCAGCCCCAAGTTCAGGCCCTGCCAAGAAGTCAAATGTCCAAAGCTCAGCTAAGCCTAAATCTGAGAAAGTGCAACTGATTGATCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAGGTGCCATTACATGATTTAATGACCTCAGTGCTAGAACTAGAAGAGTCAGCGCTAGACACTGATCAAGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAGATAATCAAGAGTTATAATGGGGAAAAGGAGAAATTAGGGAGATGTGAACAGTTCTTCATGGAATTGATGAAAGTACCACGGGTAGAATCTAAGCTCAGGGTCTTTTCGTTCAAGATTCAGTTCCATTCTCAGGTTTCTGATCTTAAAAATAGCCTAAATGCTGTGAATTCTGCTGCAGAAGAGATCAGAAATTCTGTCAAATTGAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCGGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTCACTGATACACGTGCTCGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTTTTGGATGACAAATTACCAGAAGTTTTAGACTTCTCTAAGGATCTTGCTAACCTAGAGGCAGCAGCAAAGATCCAATTGAAGTTTCTGGCAGAGGAGATGCAAGCTATAAACAAAGGGTTAGAGAAAGTTGTACAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAACATTCCGCAAGAAATTGAAAGCGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGATCATTGGCTTCACTATATTCTGCTGTGGGCAGGAACGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGTCAATTTGAGCAAGTTGTCACAACTTTGCTCAACTTCACTGGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCTGAAAGGATATTACCTACAGCAATCCGGACTGGCAATGTCAAATAA 3483 0.4295 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNEEKYKVYVDGIVSQLRENVPDASLMVFNFREEETKSLMANVMSEYDITIMDYPKHYEGCPVLKMELIHHFLRSSESWLSLGQHNVLLMHCERGAWPILAFMLAALLIYRKVYTGENRTLDMVYRQSPHELLHLLTPLNPLPSQLRYLQYISRRNVAIDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSADKSPKMLYSMPKKSKNIRAYKQGECELIKIDINCHIQGDVVIEGINLNDDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSWFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQHINTSGITNDKLDKVSDQHVETATSMHEIGPKTPQRNSYEAIQSLSSAKHSPNNDKCGKEDKTNKLASKCPTGSKNIDMKLEVSNPASSGSPDSSLTPGTPPLRPPSTTSAKEVHDSPPHTESPPHHIFPLKSEHQPQDSSYSPISSPTPGTHPSLSAVSSIQPSPPLSSKTTLNDIPPVKTRLESPPSQPPTPPPPTPPLKDQKVVRAGPPSPPPPPKKELHVKAGPPPPVPSHMNEKPHVRDGHSPPPPPPPPPLTPSPPLNSEEPSRFKPPPPPPPPHLSTGAASSTIAPPAPPAPPPPATLSSGNPNASMQTSPPVPPPPIPLGKEGLKPGSAFPMSLKVPGTAGPQSKGRVLPIGSKNNAKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDISELERLFSAAAPSSGPAKKSNVQSSAKPKSEKVQLIDHRRAYNCEIMLSQVKVPLHDLMTSVLELEESALDTDQVENLIKFCPTKEEMEIIKSYNGEKEKLGRCEQFFMELMKVPRVESKLRVFSFKIQFHSQVSDLKNSLNAVNSAAEEIRNSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEAAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKAFLCSAEAEVRSLASLYSAVGRNVDALILYFGEDPSRCQFEQVVTTLLNFTGMFNKAHEENCKQLELEMKKTAESEKKKCESERILPTAIRTGNVK 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05470 1160 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 571 589 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 633 670 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 404 750 - -
Trre15g05470 1160 Gene3D - 199 340 - -
Trre15g05470 1160 Gene3D Formin, FH2 domain 747 1129 IPR042201 -
Trre15g05470 1160 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Trre15g05470 1160 Coils Coil 923 943 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 596 623 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 502 520 - -
Trre15g05470 1160 PANTHER FORMIN-J 1 643 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 803 819 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 679 693 - -
Trre15g05470 1160 Pfam Formin Homology 2 Domain 750 1118 IPR015425 -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 465 484 - -
Trre15g05470 1160 Coils Coil 1025 1045 - -
Trre15g05470 1160 SUPERFAMILY Formin homology 2 domain (FH2 domain) 820 1138 - -
Trre15g05470 1160 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Trre15g05470 1160 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Trre15g05470 1160 Coils Coil 1119 1139 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 702 716 - -
Trre15g05470 1160 ProSiteProfiles Formin homology-2 (FH2) domain profile. 745 1144 IPR015425 -
Trre15g05470 1160 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Trre15g05470 1160 SMART PTEN_C2_2 197 336 IPR014020 -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 799 820 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 521 566 - -
Trre15g05470 1160 MobiDBLite consensus disorder prediction 415 439 - -
Trre15g05470 1160 SMART it6_source 578 1160 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05470 Trre-Chr15 63546524 63555402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05470 1 425 Protein tyrosine phosphatase (PTP) family AT5G58160 63.084 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05470 - - aprc:113848377 1707.58