Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05461 ATGTCGGATGAAGAGCACCACTTCGATTCAGTAGCCGATGCCGGAGCCTCCAAAACCTACCCTCAGCAGGCCGGTACCATCCGCAAAAACGGTTACATCGTCATCAAGGGCAGACCTTGCAAGGTTGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGTCACTTTGTTGCAATTGATATCTTCAACGGCAAAAAGCTTGAAGATATTGTTCCTTCGTCTCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTCATTGATATCTCTGAAGATGGTTTTGTGAGTCTGTTGACTGATAATGGAAGTACCAAGGATGATCTGAAGCTTCCCACTGATGATTCACTGCTTACTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATCTTGTGGTGTCTGTCATGTCTGCAATGGGAGAAGAACAGATATGTGCCCTGAAGGACATTGGTCCTAAAAATTAA 483 0.4286 MSDEEHHFDSVADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05461 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Trre15g05461 160 CDD S1_eIF5A 86 156 - -
Trre15g05461 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trre15g05461 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trre15g05461 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trre15g05461 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Trre15g05461 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trre15g05461 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Trre15g05461 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Trre15g05461 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Trre15g05461 160 Gene3D - 1 85 IPR014722 -
Trre15g05461 160 Gene3D - 86 159 IPR012340 -
Trre15g05461 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05461 Trre-Chr15 63488400 63489934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05461 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 91.195 7.96e-105 295