Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05460 ATGGCTGAGCATCGAGACTCCGAAGCTCTCCCAAAAGGAAATTGTTCAGAAAGTAACGATGAACAAAAAGCTGAAGAGATAAAGGAACGAGTCGCTGAATCACCGCCAGCCACCGAGTCGCGGAAAGACGATTTACCGAATTCTATAGAGCATAATTCAGAAACCCTAATTGCTTTTCCATCTTCAGTTTTGCAGAATCAAAGTATCGTTGCAGATTTGCAAGGGAGCTCTAATACGACTGTGAATTCGGGTGTCAAAGCTGAAACTAAGGAAACAGTTGGACCTCCTGAAAAGGAAATTACTGCAAGACAAGAAGCCCAAACACCCCCAACTCAGACCGGAAATCAGCTTCAGTTGACTGTGTTAAAATCAGCTCCATTGTCTGAAGTATCATCACCAAATTTTGTTACAAACTCTGTATCATCTGTTCCTAGTCCAACCATGGGAATAGAGAAAATGTCTACTCCAAATGTTAGTAATATGCTTGTGCTTTCTGGGGCTAAAGCTAAACCCTTATCTTCTGTTAGTGTTCCAAGGACACCATCATCTGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTTAAGAGTCCTACTACAAGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTTTTGCTAAGAAGATTGAGTGTTGGGATCATTCAGGTCATGTGATAGAGACTGTTTATAGAAGTGAGCATAGTCATGATCCCCCACGAAAGATAAATTCCATTAGGGAAAGTAAGTTTGCACCTTCTAATGAACCTACTGCAGAGAACAGTGTTTTAGCGAAGCCTGTCAGTGTTCCAAAAGAATCTGACCCATCCACGTCTTCCAAAGCTCAAGAAGAAGCTCCTTGTGGTACTGACAAGAAACCACAAAACTCATCTAATATCAATGGTAATGGTAAAGTTATTTTAAAGGAGGAACATCTTGACGAGCCAGAGCCAAAACGAAGAAAGGAGAAAGAAGACTTAATTCACTCAGATTCTCCCGTAAATCCTGGAAAGAAACCCAAGTATGTTGTACATGCAGCAGGAGATGTGGGGATATCAGGGGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTATAGATGCACTTCTGCTGGATGTCCTGTCCGGAAGCACATTGAGACTGCCGTAGACAACTCAGATGCTGTCATCATAACTTACAAGGGTGTACATGATCACGACACTCCTGTGCCTAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGTTTCCATGAATAATTTGCAGTTGACTAAACCGGACTCGCCGCAAAATCAGAAAGTTTCTACTCAATGGTCGGTGGACAAAGAAGGAGAACTAACTGGGGAAGCCATGGAGCTCGGGGGTGAGAAAGCAATAGAGTCAGCTAAAACCCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1485 0.433 MAEHRDSEALPKGNCSESNDEQKAEEIKERVAESPPATESRKDDLPNSIEHNSETLIAFPSSVLQNQSIVADLQGSSNTTVNSGVKAETKETVGPPEKEITARQEAQTPPTQTGNQLQLTVLKSAPLSEVSSPNFVTNSVSSVPSPTMGIEKMSTPNVSNMLVLSGAKAKPLSSVSVPRTPSSDGYNWRKYGQKQVKSPTTSSRSYYRCTQSNCFAKKIECWDHSGHVIETVYRSEHSHDPPRKINSIRESKFAPSNEPTAENSVLAKPVSVPKESDPSTSSKAQEEAPCGTDKKPQNSSNINGNGKVILKEEHLDEPEPKRRKEKEDLIHSDSPVNPGKKPKYVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPVSMNNLQLTKPDSPQNQKVSTQWSVDKEGELTGEAMELGGEKAIESAKTLLSIGFEIKPC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05460 494 MobiDBLite consensus disorder prediction 309 334 - -
Trre15g05460 494 ProSiteProfiles WRKY domain profile. 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 MobiDBLite consensus disorder prediction 250 264 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 73 87 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 233 247 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 233 343 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 73 116 - -
Trre15g05460 494 SUPERFAMILY WRKY DNA-binding domain 178 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 MobiDBLite consensus disorder prediction 18 49 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 274 306 - -
Trre15g05460 494 MobiDBLite consensus disorder prediction 1 53 - -
Trre15g05460 494 FunFam WRKY transcription factor 343 416 - -
Trre15g05460 494 ProSiteProfiles WRKY domain profile. 350 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 452 IPR044810 GO:0003700
Trre15g05460 494 SMART WRKY_cls 355 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 SMART WRKY_cls 182 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 Pfam WRKY DNA -binding domain 357 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 Pfam WRKY DNA -binding domain 184 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 SUPERFAMILY WRKY DNA-binding domain 351 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 Gene3D WRKY domain 172 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05460 494 Gene3D WRKY domain 340 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05460 Trre-Chr15 63479546 63483800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05460 172 494 WRKY Transcription Factor Family AT4G30935 60.429 7.21e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g05460 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05460 - - mtr:11440414 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05460 15 63479546 63483800 Trre15g05460 15 63479546 63483800 ECH