Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05459 ATGGCTGAGCATCGAGACTCCGAAGCTCTCCCAAAAGGAAATTGTTCAGAAAGTAACGATGAACAAAAAGCTGAAGAGATAAAGGAACGAGTCGCTGAATCACCGCCAGCCACCGAGTCGCGGAAAGACGATTTACCGAATTCTATAGAGCATAATTCAGAAACCCTAATTGCTTTTCCATCTTCAGTTTTGCAGAATCAAAGTATCGATTTGCAAGGGAGCTCTAATACGACTGTGAATTCGGGTGTCAAAGCTGAAACTAAGGAAACAGTTGGACCTCCTGAAAAGGAAATTACTGCAAGACAAGAAGCCCAAACACCCCCAACTCAGACCGGAAATCAGCTTCAGTTGACTGTGTTAAAATCAGCTCCATTGTCTGAAGTATCATCACCAAATTTTGTTACAAACTCTGTATCATCTGTTCCTAGTCCAACCATGGGAATAGAGAAAATGTCTACTCCAAATGTTAGTAATATGCTTGTGCTTTCTGGGGCTAAAGCTAAACCCTTATCTTCTGTTAGTGTTCCAAGGACACCATCATCTGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTTAAGAGTCCTACTACAAGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTTTTGCTAAGAAGATTGAGTGTTGGGATCATTCAGGTCATGTGATAGAGACTGTTTATAGAAGTGAGCATAGTCATGATCCCCCACGAAAGATAAATTCCATTAGGGAAAGTAAGTTTGCACCTTCTAATGAACCTACTGCAGAGAACAGTGTTTTAGCGAAGCCTGTCAGTGTTCCAAAAGAATCTGACCCATCCACGTCTTCCAAAGCTCAAGAAGAAGCTCCTTGTGGTACTGACAAGAAACCACAAAACTCATCTAATATCAATGGTAATGGTAAAGTTATTTTAAAGGAGGAACATCTTGACGAGCCAGAGCCAAAACGAAGAAAGGAGAAAGAAGACTTAATTCACTCAGATTCTCCCGTAAATCCTGGAAAGAAACCCAAGTATGTTGTACATGCAGCAGGAGATGTGGGGATATCAGGGGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTATAGATGCACTTCTGCTGGATGTCCTGTCCGGAAGCACATTGAGACTGCCGTAGACAACTCAGATGCTGTCATCATAACTTACAAGGGTGTACATGATCACGACACTCCTGTGCCTAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGTTTCCATGAATAATTTGCAGTTGACTAAACCGGACTCGCCGCAAAATCAGAAAGTTTCTACTCAATGGTCGGTGGACAAAGAAGGAGAACTAACTGGGGAAGCCATGGAGCTCGGGGGTGAGAAAGCAATAGAGTCAGCTAAAACCCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1479 0.4327 MAEHRDSEALPKGNCSESNDEQKAEEIKERVAESPPATESRKDDLPNSIEHNSETLIAFPSSVLQNQSIDLQGSSNTTVNSGVKAETKETVGPPEKEITARQEAQTPPTQTGNQLQLTVLKSAPLSEVSSPNFVTNSVSSVPSPTMGIEKMSTPNVSNMLVLSGAKAKPLSSVSVPRTPSSDGYNWRKYGQKQVKSPTTSSRSYYRCTQSNCFAKKIECWDHSGHVIETVYRSEHSHDPPRKINSIRESKFAPSNEPTAENSVLAKPVSVPKESDPSTSSKAQEEAPCGTDKKPQNSSNINGNGKVILKEEHLDEPEPKRRKEKEDLIHSDSPVNPGKKPKYVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPVSMNNLQLTKPDSPQNQKVSTQWSVDKEGELTGEAMELGGEKAIESAKTLLSIGFEIKPC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05459 492 MobiDBLite consensus disorder prediction 272 304 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 173 201 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 1 54 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 167 201 - -
Trre15g05459 492 Gene3D WRKY domain 338 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 Gene3D WRKY domain 170 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 MobiDBLite consensus disorder prediction 68 115 - -
Trre15g05459 492 ProSiteProfiles WRKY domain profile. 181 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 451 IPR044810 GO:0003700
Trre15g05459 492 ProSiteProfiles WRKY domain profile. 348 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 MobiDBLite consensus disorder prediction 129 150 - -
Trre15g05459 492 SUPERFAMILY WRKY DNA-binding domain 176 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 MobiDBLite consensus disorder prediction 18 49 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 307 332 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 68 85 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 248 262 - -
Trre15g05459 492 FunFam WRKY transcription factor 341 414 - -
Trre15g05459 492 Pfam WRKY DNA -binding domain 182 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 Pfam WRKY DNA -binding domain 355 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 SMART WRKY_cls 353 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 SUPERFAMILY WRKY DNA-binding domain 349 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05459 492 MobiDBLite consensus disorder prediction 231 245 - -
Trre15g05459 492 MobiDBLite consensus disorder prediction 231 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05459 Trre-Chr15 63479546 63483800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05459 170 492 WRKY Transcription Factor Family AT4G30935 60.429 6.19e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g05459 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05459 - - mtr:11440414 712.22