Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05454 ATGAGTCTGCAGCGAGAAAATTCTTTTAGGTGGGATGTCTTGGATTCTAGACTATCATCATCTTCTGATGTCAGAGTTACCAAATCTGGATTTATACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTGCTGCATATTATTTGATGTTGTACATGCTTGCCAGTCATATAGTTGGTTCTTTTTGACGTTCATCTCAAAATATTGTTATTGTTTATGGTGGGGTCTCCAAAATTTAAGTACCCTTGGTCAGGGGCTTCAGACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTTGCCATAGCAGGCCTCATCCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAATCTCTTACCCTTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGTGAGAAGGGTTCCACTATTTGA 489 0.4192 MSLQRENSFRWDVLDSRLSSSSDVRVTKSGFIPQIVVWRFLQRCCILFDVVHACQSYSWFFLTFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRREKGSTI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05454 162 SUPERFAMILY Voltage-gated potassium channels 38 157 - -
Trre15g05454 162 Gene3D - 13 124 - -
Trre15g05454 162 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 61 157 - -
Trre15g05454 162 Pfam Ion transport protein 65 126 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05454 Trre-Chr15 63442980 63448591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05454 63 156 Ion Channels AT1G19780 88.298 8.05e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05454 K05391 - bvg:104893415 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05454 15 63442980 63448591 Trre15g05454 15 63442980 63448591 ECH