Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05436 ATGCAGCAAGGTGATCAAACGGTTCTTAGCTTGAGGCCTGGTGGTGGTCGAGGAAACAGGCTTCTCGCTCCTAGATTTGATTCTTCCTCCTCCAACTCATCGGTGATTAATCCTGCTTTTGGTTCCTTTTCATCTGATCTTTCTCTGCTTCGTCCTCATGGTGCTGCTTCTTCTCACTTTGCTTTTAAGGTTGGAGATTCGCAATTTGAAGGTCGTGAGCGTGTGCGATATACCAAAGAAGAGCTTTTAAAGATTAGAGAGACGGTCGAGGAGACCCCTGATGATATTTTGAAGCTCAGACATGATATTGATGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGTCGTGTAGAAAACAATCCCCCAGCTCAAATTCAAAATCGGTACTCTGAACCAGATAACCGTGACTGGCGTGGCCGAACTGCGCAACCTCCGGCCAACACAGATGAGAGGTCTTGGGATAATCTCAAGGACAGAGAACCTGGCAATACTATTCAGGCTAATCGTCAAGATCAACCGTTCCCTCGTAATAACCAAGGGGGAGGACCTGCTCCTACTCTAGTCAAAGCTGAGGTACCATGGTCTGCTAGAAGGGGAAGTCTCTCTGACAAGGATCGTGTCTTAAAGACTGTTAAAGGGATACTAAACAAGTTGACTCCTGAGAAATTTGATCTTCTGAAGGGTCAGTTGATCGATTCTGGAATTACATCAGCTGATATATTGAAGGGAGTCATTTCATTGATATTTGATAAGGCTGTGCTAGAACCAACATTCTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGATGGGAAAGAAATAACTTTTAAGAGAGTACTCTTGAATAACTGCCAGGAAGCTTTTGAAGGTGCTGGTAAACTGAGGGAAGAATTGGCGCAGATGACTTCCCCTGAGCAGGAGTCGGAGCGACGTGACAAGGAAAGACTTGTCAAAATTCGTACCCTAGGAAACATTCGTTTAATCGGTGAGCTGCTGAAGCAAAAAATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGGCCTTCTGACAGCAAGGAGGTCTGTCCGGCTGAGGAAAATGTTGAAGCCATTTGTCATTTTTTCAACACTATTGGCAAGCAGCTTGATGAAAGTCCAAAATCACGACGCATAAATGATATGTACTTTAAACGGTTGAGAGAATTGAGCACCAATCCTCAACTTGTACCGCGGATGAGATTCATGGTTCGTGATGTTATAGATTTGCGTGCTAGTAACTGGATTCCAAGACGGGAAGAGGTTAAGGCAAAAACCATCAGTGAAATCCATAATGAGGCAGAAAAGAATCTTGGGTTGCGTCCAGGCGCCACTGCAGTTATGAGAAACACCCGTGTGTCTGGTGTTCAAGGCAATACAGGTGTTGGGGGCTTTCCCATTGCCCGACCTGGTACAGGAGGTTTAATGCCTGGGATGCCGGGTGCCAGGAAGATGCCTGGGATGCCTGGTATTGATAATGATAACTGGGAGGTGCCTAGAACTAGATCTATGCCAAGAGGAGACACGTCCGTCACACAAGTTGGAGGGCGTGGCCAATCTCCTTTCCTTTCCAAGCCATCAGCTCTAAACTCAAAGTTACTGCCTCAAGGTAGTAGTGGTCTTTTAAGTGGGAAGAATAGTGCCCTGGTGCACGGAGGTGGCACTCCTGTTCGTCCATCAGACCTTGCTTCAGGTACCGAGCCTACACCTCAAATCCCTTCCCCTGTTAAACCTGTTTCTGCCGTATCCCCTGAGAAGCCACAGGCCCCAGCTGCAAGTTTGAATATCGATTATCTTCACCGCAAAACTGTCTCTCTTATAGAAGAATACTTCATTGTTCGAAGTTTTGACGAGGCATTGCAGTGTGTGGAGGAACTAAAAGCTCCAACTTATTACCCAGAGGTTGTCAAGGAAGCCATTTCCCTTGGACTAGAGAGAAATCCTCCATGTGTTGAACCTGTTGCCAAACTTATTGAGCATCTGTTTATCAAGAAGATTCTCTCAGCTAGAGACATAGGGACTGGATGTTTGTTATTTGCTTCTCTGCTTGATGACATTGGTATTGATTTACCTAAAGCACCAGGTAACTTTGGTGAGATAATAGGGAAACTAGTTTCTGCTGGGGGTTTAGACTTTAAGGTGGTGAGAGAGATTCTTAAGAAGGTGGGTGATGACTACATCCAGAAAGCAATATTCAACTCTGCAGTGCAGTCAACCGGCCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCATGCCAGGCTCTGTTCGAGTGA 2343 0.4558 MQQGDQTVLSLRPGGGRGNRLLAPRFDSSSSNSSVINPAFGSFSSDLSLLRPHGAASSHFAFKVGDSQFEGRERVRYTKEELLKIRETVEETPDDILKLRHDIDAELFGEDQSWGRVENNPPAQIQNRYSEPDNRDWRGRTAQPPANTDERSWDNLKDREPGNTIQANRQDQPFPRNNQGGGPAPTLVKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPDGKEITFKRVLLNNCQEAFEGAGKLREELAQMTSPEQESERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPSDSKEVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFKRLRELSTNPQLVPRMRFMVRDVIDLRASNWIPRREEVKAKTISEIHNEAEKNLGLRPGATAVMRNTRVSGVQGNTGVGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDTSVTQVGGRGQSPFLSKPSALNSKLLPQGSSGLLSGKNSALVHGGGTPVRPSDLASGTEPTPQIPSPVKPVSAVSPEKPQAPAASLNIDYLHRKTVSLIEEYFIVRSFDEALQCVEELKAPTYYPEVVKEAISLGLERNPPCVEPVAKLIEHLFIKKILSARDIGTGCLLFASLLDDIGIDLPKAPGNFGEIIGKLVSAGGLDFKVVREILKKVGDDYIQKAIFNSAVQSTGQAVLDSQASDIEACQALFE 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05436 780 FunFam Eukaryotic translation initiation factor isoform 4G-2 199 436 - -
Trre15g05436 780 Gene3D - 200 436 - -
Trre15g05436 780 SMART if4_15 208 435 IPR003890 GO:0003723|GO:0005515
Trre15g05436 780 SUPERFAMILY ARM repeat 619 759 IPR016024 -
Trre15g05436 780 SUPERFAMILY ARM repeat 202 437 IPR016024 -
Trre15g05436 780 MobiDBLite consensus disorder prediction 159 179 - -
Trre15g05436 780 Pfam MA3 domain 621 732 IPR003891 -
Trre15g05436 780 MobiDBLite consensus disorder prediction 507 607 - -
Trre15g05436 780 MobiDBLite consensus disorder prediction 526 566 - -
Trre15g05436 780 Pfam MIF4G domain 208 435 IPR003890 GO:0003723|GO:0005515
Trre15g05436 780 SMART ma3_7 620 732 IPR003891 -
Trre15g05436 780 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 61 771 IPR045208 GO:0003743
Trre15g05436 780 MobiDBLite consensus disorder prediction 112 185 - -
Trre15g05436 780 Gene3D - 613 774 - -
Trre15g05436 780 MobiDBLite consensus disorder prediction 1 28 - -
Trre15g05436 780 ProSiteProfiles MI domain profile. 619 741 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05436 Trre-Chr15 63357126 63363411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05436 1 778 Eukaryotic Initiation Factors Gene Family AT5G57870 63.098 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05436 K03260 - gmx:100781275 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05436 15 63357126 63363411 Trre15g05436 15 63357126 63363411 ECH