Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05422 ATGAGAAAGAAACTGCGAGTCGTTACTGGATGCGACTCGGAAGATGAAGAAGAAGATGAAACCAAAGAGCAGAAGTATCCTAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGGGTTCAGTGCTTCAAGTCTCATCGGTTCAGATCGGTTCGATGGGGTTTACAAAGGTGTACTCTTAGATAATACAAGAGTAGCTGTGAAGGTATTGGATACAAGAACAGATGCTTTGGTTACTGATTTTGGTATTTCAAGGCTTGCAAAAGGTTATGACAAGGCTTCCACATGTAATAATTCAACATCTTTCAGTTCAACACATGGCTTGTTATTTGGCTCAGTTGGTTATATAGCTCCAGAATATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTAATCCTGTTAGAAATAGTGACAGACAAGCTTAAAAACATTGTTGAAGAAGCACTTCAAAGGTGCCGTCTTTCTTGTGTGCCAAGTCATGATACCAAAGGTTTGGAAGATGTTATGTTGGAACTCATTGAGCTAGGGATACTCTGCACACAACAGAACACTTCAACAAGACCAACCATGATAGATGTAGCACAAGAGATGGGGAGATTGAAGGATTATCTCATTAATTCTATTAGAAGAGAAGATAATTTAATTGAAAATTAA 675 0.3852 MRKKLRVVTGCDSEDEEEDETKEQKYPRISYRQLREATGGFSASSLIGSDRFDGVYKGVLLDNTRVAVKVLDTRTDALVTDFGISRLAKGYDKASTCNNSTSFSSTHGLLFGSVGYIAPEYGMGKHASTEGDVYSFGVILLEIVTDKLKNIVEEALQRCRLSCVPSHDTKGLEDVMLELIELGILCTQQNTSTRPTMIDVAQEMGRLKDYLINSIRREDNLIEN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05422 224 Pfam Protein tyrosine and serine/threonine kinase 79 203 IPR001245 GO:0004672|GO:0006468
Trre15g05422 224 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g05422 224 Gene3D Transferase(Phosphotransferase) domain 1 59 221 - -
Trre15g05422 224 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05422 224 SUPERFAMILY Protein kinase-like (PK-like) 25 204 IPR011009 -
Trre15g05422 224 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 71 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05422 Trre-Chr15 63265036 63266561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05422 70 204 Receptor kinase-like Gene Family AT5G07280 33.775 7.60e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g05422 PK_Tyr_Ser-Thr 4.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05422 - - tpra:123909601 206.838