Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05412 ATGCCTCTCAACGTTCTTCTTTTCTTGTTCCTCTTCCTCTCTCCACAGCCTCTCTCTTCCGCTTCATTGCCTCGTAACCCCGAAGTGGAAGCTTTGATGAGTATTAAAGAATCTTTAAATGATCCACATGGTGTATTAAGCAACTGGGATGAATTCTCTGTTGACCCTTGTAGTTGGCCCATGATTACTTGCTCTTCCGATTACTTCGTTATTGGCTTGGGTGCTCCTAGTCAAAATCTCTCTGGAACTTTATCTTCAGCAATTGGAAATTTAACAAATCTTAAACAAGTTTTACTGCAGAATAACAACATCTCAGGCAAAATACCACCGGAACTTGGTAACCTTCCCAAGCTTCAGACTTTAGATCTTTCAAATAACAGATTCTCTGGTTTCATTCCATCTTCTCTCAGTCAATTGAATAGTCTTCAGTACTTGAGGTTGAACAACAATAGCTTATCTGGACCTTTTCCTGTTTCACTGGCAAAAATCACACAACTTGCTTTCTTGGACTTGTCTTATAACAATCTTAGTGGACCATTACCCAAGTTTCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAATTTGTCTAAGCATCTCTATTGAAGGCTGTTCTGGATCAGTGACCCTTATGCCTGTTCCTTTCTCTCAAGCCTCATCAGAAGGGAAACACAAATCCAAAAAACTAGCAATTGCTCTTGGGGTCAGCTTTAGTTTTGTTTCTTTTGTGATCCTGATTTTGGGTCTCTTTTGGTATAGAAAGAAAAGACAGCATGGAGCCATCTTGTATATTGGTGATTATAAAGAAGAGGCAGTTGTTAGCTTAGGAAATCTCAAAAATTTCGGTTTCAGAGAGCTCCAACATTCAACGGATAATTTCAGTTCCAAGAACATACTTGGTGCTGGGGGTTTTGGCAATGTTTATAGGGGGAAGCTTGGAGATGGCACAATGGTAGCGGTGAAAAGGCTGAAAGATGTTAACGGTAGTGCTGGGGAGTTACAGTTCCAAACAGAATTGGAGATGATCAGCTTAGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTGCTAACGAAAAACTTCTGGTTTACCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAATGCAAGAAAGAGGATAGCAATTGGAGCTGCAAGGGGACTTTTGTATCTTCATGAACAATGTGATCCGAAGATAATACACAGAGATGTAAAGGCTGCCAATGTGCTTCTTGATGACGACTATGAGGCCATTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTTACCACTGCTGTCCGTGGTACTGTTGGGCACATTGCTCCGGAGTACCTCTCCACTGGCCAGTCATCCGAGAAAACTGATGTGTATGGATTCGGCATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACCTTGAATCAAAAAGGTGCTATGCTTGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGTTGAACTGTTGGTGGACAAAGAATTAGGGAGCAACTATGATAGAATTGAGGTTGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTGACAGCTCACCGTCCAAAAATGTCGGAAGTGGTCCGAATGCTTGAAGGAGACGGACTTGCTGAGAAGTGGGCGTCAACACATAATTATGGTAGCAACTGCTGGAGCCATAGTCACAGCAACAGTAGTAGCAATAGCTCATCTCGTCCTACCTCTACTTCAAAACATGATGACAATAATGTTCATGATCGTTCCGGCATGTTCGGCATGACAATGGATGATGATGATGATCAGTCTTTGGATTCCTATGCTATGGAACTTTCTGGTCCTAGATAA 1920 0.4193 MPLNVLLFLFLFLSPQPLSSASLPRNPEVEALMSIKESLNDPHGVLSNWDEFSVDPCSWPMITCSSDYFVIGLGAPSQNLSGTLSSAIGNLTNLKQVLLQNNNISGKIPPELGNLPKLQTLDLSNNRFSGFIPSSLSQLNSLQYLRLNNNSLSGPFPVSLAKITQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLICLSISIEGCSGSVTLMPVPFSQASSEGKHKSKKLAIALGVSFSFVSFVILILGLFWYRKKRQHGAILYIGDYKEEAVVSLGNLKNFGFRELQHSTDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATANEKLLVYPYMSNGSVASRLRGKPALDWNARKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQQEKKVELLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASTHNYGSNCWSHSHSNSSSNSSSRPTSTSKHDDNNVHDRSGMFGMTMDDDDDQSLDSYAMELSGPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05412 639 Pfam Protein tyrosine and serine/threonine kinase 297 563 IPR001245 GO:0004672|GO:0006468
Trre15g05412 639 Gene3D Transferase(Phosphotransferase) domain 1 371 581 - -
Trre15g05412 639 Gene3D Phosphorylase Kinase; domain 1 265 370 - -
Trre15g05412 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 573 - -
Trre15g05412 639 SUPERFAMILY L domain-like 26 198 - -
Trre15g05412 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Trre15g05412 639 ProSiteProfiles Protein kinase domain profile. 294 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05412 639 Pfam Leucine rich repeat 116 176 IPR001611 GO:0005515
Trre15g05412 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 207 - -
Trre15g05412 639 SUPERFAMILY Protein kinase-like (PK-like) 277 564 IPR011009 -
Trre15g05412 639 PRINTS Leucine-rich repeat signature 118 131 - -
Trre15g05412 639 PRINTS Leucine-rich repeat signature 163 176 - -
Trre15g05412 639 MobiDBLite consensus disorder prediction 583 639 - -
Trre15g05412 639 SMART serkin_6 294 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05412 639 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Trre15g05412 639 FunFam Somatic embryogenesis receptor kinase 1 265 370 - -
Trre15g05412 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Trre15g05412 639 MobiDBLite consensus disorder prediction 603 619 - -
Trre15g05412 639 MobiDBLite consensus disorder prediction 583 602 - -
Trre15g05412 639 FunFam Somatic embryogenesis receptor-like kinase 1 371 582 - -
Trre15g05412 639 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05412 Trre-Chr15 63172679 63176487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05412 26 639 Receptor kinase-like Gene Family AT5G16000 65.273 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre15g05412 PK_Tyr_Ser-Thr 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05412 - - gmx:100797186 1023.46