Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05403 ATGGCAATGGCTGCTGCTATGCGACGGGAAGGGAAGCGTTTGGCTCCTCTCGCCTCTTCTCAAACAATCACGAACACTCTCCGATCTTCTCTCGCCTCTCCGTTAGACCAATCTTCTATTGGAGGATCACGTTCAATTTCCACGCAAATTGTGAGAAATCGCATGAAGAGTGTGAAAAATATCCAGAAAATTACTAAGGCTATGAAGATGGTTGCTGCTTCTAAACTAAGAGCTGTTCAAACTAGGGCTGAAAATTCACGTGGTTTGTGGCAGCCATTTACGGCTCTTCTCGGTGATGCCACAAGTGTTGTTGTCAAGAAGAATGTTGTTGTTACCGTTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAACTCCACATCTGTCAAGATAAGCAGGGCATTGAGCAAGTTGAATTCTGGACCTGATAAAGAGACAAAGTACGTCATATTGGGAGAGAAGGCCAAGGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTCAGCTTGACTGAGCTGCAAAAGAATCCTCTGAACTATACTCAGGTGTCTGTCTTGGCTGATGACATTCTAAAGAACGTGGAGTATGATGCACTGAGGATTGTTTTCAACAAATTTCATTCGGTTGTACAATTTATTCCAACGGTGTCAACTGTACTATCCCCTGAGATTGTTGAAAGAGAGGCTGAAGCTGGAGGAAAGCTCGGTGAACTGGATTCCTACGAGATTGAAGGGGGTGAGACAAAATCAGAGGTTCTTCAGAATCTGTCCGAGTTCCAGTTTTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATCACCACCGAGTTGATTGAGATTATCTCTGGAGCATCAGCACTGACTGGTTAA 981 0.4495 MAMAAAMRREGKRLAPLASSQTITNTLRSSLASPLDQSSIGGSRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVVVKKNVVVTVSSDKGLCGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVQFIPTVSTVLSPEIVEREAEAGGKLGELDSYEIEGGETKSEVLQNLSEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05403 326 Pfam ATP synthase 49 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 CDD F1-ATPase_gamma 48 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 FunFam ATP synthase gamma chain 279 321 - -
Trre15g05403 326 PANTHER ATP SYNTHASE GAMMA CHAIN 27 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 NCBIfam ATP synthase F1 subunit gamma 47 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 Hamap ATP synthase gamma chain [atpG]. 45 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 49 324 IPR035968 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 PIRSF ATP_synthase_gamma 12 324 - -
Trre15g05403 326 Gene3D - 71 283 - -
Trre15g05403 326 FunFam ATP synthase subunit gamma 71 283 - -
Trre15g05403 326 ProSitePatterns ATP synthase gamma subunit signature. 310 323 IPR023632 -
Trre15g05403 326 Gene3D ATP synthase, gamma subunit, helix hairpin domain 51 321 - -
Trre15g05403 326 PRINTS ATP synthase gamma subunit signature 105 124 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 PRINTS ATP synthase gamma subunit signature 271 290 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 PRINTS ATP synthase gamma subunit signature 302 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre15g05403 326 PRINTS ATP synthase gamma subunit signature 197 214 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05403 Trre-Chr15 63082860 63086940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05403 28 324 Primary Pumps ATPases AT1G15700 30.372 1.07e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05403 K02136 - gmx:100790402 531.176