Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05396 ATGGGTTGTTTAGATGGTTATCTTCCAGTAATTGTTATGATAGGATTACAATTTCATTATGCATTACTTGCCATCTTTACAAGAGCTGCTCTATTAGATGGATTGACTCCTACTGTCTTTGTAGTTTATAGGCAAGGCATAGCCACTTTGGCATTGGCACCTATCATCATTTCCTCTAATAAACGGAGACAATCTTTGAAGACTTCATTAGGATTAAAGAGTTTCTCTTTGATGTTTATCACCTCACTTGTTGGGGTTACATTAAATCAGAATGCATATTTTAGTGGTTTATTCTATGCATCTTCTACAGCAGCAACTGCTATGAGTAATTTGATACCTGCATTAACTTTTGTACTTGCAGCAATTTTGGGATATGAGAAAATTGATCTTCGAAGTTTAAGAAACGCGGCCAAGATATTAGGGACAATTTGTTGTGTCGGTGGAGCCTTAACAATGGCATTTCTCAAAGGAAATAAATTGCTACACATGGAGTTCTTTCCTGATTCTAAACATCTCACTGCAAGTGGAGATGATGATTGGATTTTTGGTTGTCTATTGCTCTTAGCAAGTAGTGTTTTTTGGTCATGTTGGATGATCATGCAGGTACCGATTTCTTCATCCTGTCCGGATCATATTTTGTCGACTTTTTGGATGTGTCTTTTCGCTACAATACAGTCAGCTATATTTGCACTGATCAAAGAGCAGAATCTTCAATCATGGATATTAAATTCTCCTTTACAAATTTCATGCAGTTTATATGCAGGAATTGGAATTGCTGTTAGCTTCTTCATTCAATCTTGGTGCATCTCAGAAAGAGATCCTCTATACTGTGCAATGTTCAACCCTCTAGCAACTGTCATCACAGCTTTGGTATCTGTTATATTCCTACAAGAAGAGCTACACATTGGAAGTTTGGTAGGAGCTATTGGAGTGATCACTGGTTTGTATATTGTGTTATGGGGTAAAGCGAAAGACTTTGATGGGAGAAAACAAGAGCTACAACAATCAAACATCGTCGATGATGAAATAAGTAATAGGATAGATTTGGAAGAACCACTTCTAGCAGAGAAGTCAGAATATGTAAAAGAGAGCAAGATGGAGTCCTAA 1107 0.3704 MGCLDGYLPVIVMIGLQFHYALLAIFTRAALLDGLTPTVFVVYRQGIATLALAPIIISSNKRRQSLKTSLGLKSFSLMFITSLVGVTLNQNAYFSGLFYASSTAATAMSNLIPALTFVLAAILGYEKIDLRSLRNAAKILGTICCVGGALTMAFLKGNKLLHMEFFPDSKHLTASGDDDWIFGCLLLLASSVFWSCWMIMQVPISSSCPDHILSTFWMCLFATIQSAIFALIKEQNLQSWILNSPLQISCSLYAGIGIAVSFFIQSWCISERDPLYCAMFNPLATVITALVSVIFLQEELHIGSLVGAIGVITGLYIVLWGKAKDFDGRKQELQQSNIVDDEISNRIDLEEPLLAEKSEYVKESKMES 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05396 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Trre15g05396 368 PANTHER WAT1-RELATED PROTEIN 8 325 IPR030184 GO:0016020|GO:0022857
Trre15g05396 368 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020
Trre15g05396 368 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020
Trre15g05396 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05396 Trre-Chr15 63042927 63045914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05396 1 356 Nodulin-like Gene Family AT4G30420 44.324 5.89e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05396 - - psat:127138496 551.206