Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05385 ATGAACTTGTTGGAGAGAAAAAAGGCTATAAAGCTCTCAGCAGATTTAGCCATGGCTTCCACCAAAGACAAAACTACCCTTTGGAGAAAAGCCCTATTTGCAAATATTTCAACAAACATAGATGATGAACAAGACATATCAACAACCTCATCACTACAAAAGGTAATAATAAGAAAAAACTCGACGAATTCGTACCCTCTCAGAAAAAGGATAACCGGAAGGAGAAAGATCTTGAGAAGAAATCATACAAAGGAAAGAATGGAGGCGAGTTTTATCGCGATGCGGTTGGTTAAGAAGAGAACAAGGAGGCTGAAGAGTTTGTTACCAGGTGGAAAATTCATGGATAATGCTTGTTTGGTTGATGAAACCCTAGATTATATAGAATCTTTGAAAGCTCAAGTTGAAGTAATGAGGTGTCTTGTTACTTCTTCTGAGCTCTTCATTAATCAACCGTAA 456 0.375 MNLLERKKAIKLSADLAMASTKDKTTLWRKALFANISTNIDDEQDISTTSSLQKVIIRKNSTNSYPLRKRITGRRKILRRNHTKERMEASFIAMRLVKKRTRRLKSLLPGGKFMDNACLVDETLDYIESLKAQVEVMRCLVTSSELFINQP 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05385 151 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 5 142 IPR044660 GO:0006355
Trre15g05385 151 CDD bHLH_AtIBH1_like 95 141 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05385 Trre-Chr15 62953209 62953664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05385 5 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 44.444 9.03e-25 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05385 - - lang:109346753 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05385 15 62953209 62953664 Trre15g05385 15 62953209 62953664 ECH