Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05379 ATGGGAAGAATTTTTATGCCATTTCAAGGTGATACCTTTATGCCACCATTAGCACAACCACCAATTTCACCATTTCCATCTATCATAGTTTCTAGTCTTCGATCTAATAATAATGCTTTTGGTTTTAACAATAGTGATACTTTAAAGGTTAGTCCAAGTATTCTTATAATCATTATTATTTTAGCTATTGTTTTCTTCATTTCTGGTTTGCTTCATCTTTTAGTTAGATTTTTATGGAGACCTGAGAGTAGAGACCCTGATGAATTAAGTGATGTTACTGTTCTTCAAGGTCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCTTTCATTGATACACTTCCTGTGTTTCTTTATAAAACTATTATTGGATTGAAAGTGAACCCTTTTGATTGTGCTGTTTGTTTATGTGAATTTGAACTTGAAGATAAGCTTAGATTGTTACCAAAATGTAGTCATGCTTTTCATATGGAATGTATTGATACATGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTTCATGATTTCAACACAAGTACTAATTGTTCACCTTTAGTTCTTGTTCTTGAATCTGGTAGTGATAGTTCAAGAGAAATTGATCAAGAAAGAGAAGCTGAAATTGGTATAGGTAGTAATGTTGTTGGTAGGACTGGTTCTGTAACTTCTGTTAGGTCAACAAATTCTTATCTTGGTTGTCGCCGAGACGGTGAATTCGGAGATGATACGGCTTCGGTTGAAAACATTCCTGATTCAAATGTTGAAGTTGGTGGTGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGTAGCAACAATGTTGATGATAGAAGGTGTTTTTCGATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATGAAGCAACAATTGAGTAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGACATAGACAAGCAATGTCAGAATGTGATTGTGAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGTTAGAACTGAGGATGCTGCTGCTGCTAATACTATTGGTAGGAGTAAAAAAGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAGAAATGATGATGTAGCTGATTCATCTAGAAGAGCTTTTTCATTTAGGTTTCCATTACAAAGTAATGTTGGTGAAGATTTGAAAGGTAAGAATGGTAGATTTCATACAAGAAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGTAGCAAGTGAATTTGGTGGTTATGATGAAGAAAGTCAAAGCTGTTATAGTATGGATTCTTCTCAACCTAGAGCACCTTCTTTTGCTAGAAGAACTTTGCTTTGGCTTACAGGAAGACAGAATAAGGTTGTTCATTCATCATCTGCTTCTACCACCCTTTAG 1503 0.352 MGRIFMPFQGDTFMPPLAQPPISPFPSIIVSSLRSNNNAFGFNNSDTLKVSPSILIIIIILAIVFFISGLLHLLVRFLWRPESRDPDELSDVTVLQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTSTNCSPLVLVLESGSDSSREIDQEREAEIGIGSNVVGRTGSVTSVRSTNSYLGCRRDGEFGDDTASVENIPDSNVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKQQLSKKKNVLPLIPGHRQAMSECDCESRRDFKFASFDSVRTEDAAAANTIGRSKKESFSISKIWLRGKKDKRNDDVADSSRRAFSFRFPLQSNVGEDLKGKNGRFHTRSTVSEMDFGKWENGVASEFGGYDEESQSCYSMDSSQPRAPSFARRTLLWLTGRQNKVVHSSSASTTL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05379 500 SMART ring_2 136 177 IPR001841 -
Trre15g05379 500 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Trre15g05379 500 SUPERFAMILY RING/U-box 130 187 - -
Trre15g05379 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Trre15g05379 500 FunFam RING-H2 finger protein ATL46 97 183 - -
Trre15g05379 500 CDD RING-H2_EL5-like 135 178 - -
Trre15g05379 500 Pfam Ring finger domain 135 178 IPR001841 -
Trre15g05379 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05379 Trre-Chr15 62869004 62870506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05379 49 497 C3H Transcription Factor Family AT2G18650 46.039 6.17e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05379 - - gmx:100797283 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05379 15 62869004 62870506 Trre15g05379 15 62869004 62870506 ECH