Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05359 ATGAAATTGAGAGTTGGGGTCCCTAAGAAAGAAGGTTTCGAACAATTTGTAAATGTAGTTTGGGACTCTCATGAGAAAAAGTACAATTTTTCTGGATATTGCATGGATGTTTTCAATGCCGTTGTAAGCAACTTAACTTTCAATGTTTCTCTACAAATTGAATCTTATGACGTTTTTGATGAATTAAAACGCAGTGTTGGAACATACCATTCACTTCGCCACCAGATCCCAGCAAAGTATGATGTTATGGTCGGAGACATAACAATTACAGCGGATCGTGCAAAATTTGTAGATTTTACACTGCCATATACAGAATCAGGAGTTAGAATGTTAGTTCCTATTGTACATGGGAGGCAGCAAACCATGTGGATATTTGTGAAACCCTTTAGTTGGGATCTTTGGTTGAGCATACTCATAATCTCCATGCTCATAGGGTTTGTCATACTCATCATGGAAAGAAACGTACATATTGTTGTTCGTCACCAGGACGAGAGTTCTCCAGATCGACAACAACTCAACGCAATGACCATTTTATGGTTTCCGATATCACAAGCCATTCTTCCTGAAAGACAGGTGGTTGCCAAAAAGTGCTCAAGATTTGTGCTGATGGTTTGGCTACTATTAGCGTTTGTCCTCATGCAAAGTTACACAGCTAATTTGACGTCTATATTGACCGTAGATCAAATACAACCCAGTTTTCTCAGCTTGAATGATCTAAGAAAATATGGATATTATGTTGGATATCAAACCGGTTCTTTCGTTTATGATGTCTTGGTGCAACAATTGCAGTTTGATCCCTCCAAGTTGAAGCCATATAACAACATTTATAGCTATCATGACGCTTTGAACCGTGGAAGCCAAGGTGGGGGTGTCATAGCTATATTAGACGAAGTTCCATACCTTAATGCCTATCTTGAAACGTTTGGATCCAATTACATCATAGCTGGTCCAACCCATCCAAGTGAAGGATTTGGTTTTGTATTTCCTTACAACTCCAATCTTACTGCTCACTTTTCAAGAGCAATCTTAAATGTGAGGGAAAATTATCTTATAATGAATCAGATTGAGGAAAAATATTTTGGGAGAATTGAAGGGATACAAAAGCAGTATGAGCAAGTGTCTTCAGCCTCACCAAGTCTTACCTTTCACAGCTTTGCAGGGCTCTTTTTGATCACTGGCATTTCTATTTTATTGGCATTATTTGTCTCTGAAACTCTTAATTGTCAAACATCTATCTCGATGCTTAGAGAATATATTCAGAGATTATTGCTACGCTCTCCACCTCCTACAGAAACACGTGTTCATCCAAATGATCTTCATTCAACCTAG 1329 0.383 MKLRVGVPKKEGFEQFVNVVWDSHEKKYNFSGYCMDVFNAVVSNLTFNVSLQIESYDVFDELKRSVGTYHSLRHQIPAKYDVMVGDITITADRAKFVDFTLPYTESGVRMLVPIVHGRQQTMWIFVKPFSWDLWLSILIISMLIGFVILIMERNVHIVVRHQDESSPDRQQLNAMTILWFPISQAILPERQVVAKKCSRFVLMVWLLLAFVLMQSYTANLTSILTVDQIQPSFLSLNDLRKYGYYVGYQTGSFVYDVLVQQLQFDPSKLKPYNNIYSYHDALNRGSQGGGVIAILDEVPYLNAYLETFGSNYIIAGPTHPSEGFGFVFPYNSNLTAHFSRAILNVRENYLIMNQIEEKYFGRIEGIQKQYEQVSSASPSLTFHSFAGLFLITGISILLALFVSETLNCQTSISMLREYIQRLLLRSPPPTETRVHPNDLHST 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05359 442 Gene3D - 1 121 - -
Trre15g05359 442 SUPERFAMILY Periplasmic binding protein-like II 2 361 - -
Trre15g05359 442 PRINTS NMDA receptor signature 133 158 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre15g05359 442 PRINTS NMDA receptor signature 385 409 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre15g05359 442 PRINTS NMDA receptor signature 200 227 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre15g05359 442 Gene3D - 122 265 - -
Trre15g05359 442 Pfam Bacterial extracellular solute-binding proteins, family 3 29 361 IPR001638 -
Trre15g05359 442 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 403 IPR015683 -
Trre15g05359 442 SMART GluR_14 2 362 IPR001320 GO:0015276|GO:0016020
Trre15g05359 442 Pfam Ligand-gated ion channel 362 395 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05359 Trre-Chr15 62688956 62692104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05359 2 402 Ion Channels AT5G11210 36.855 2.24e-78 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05359 K05387 - tpra:123903997 600.127