Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05357 ATGGGGTCCTCCTTAAGTTGTTGTGGTTCAGAGAAGGTTGATGAAGTGCCATCATCATATGGTGTAGCTAACAATTCTTGGAGAATATTCACATACAAGGAGTTGCATACAGCTACAAATGGATTCAGTGATGATTATAAGCTTGGTGAAGGTGGGTTTGGGAGTGTCTATTGGGGAAGAACCAGTGATGGTCTCCAGATAGCAGTGAAGAAGCTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTACTTGGAAGGGTCAGGCACAACAATTTGTTAGGTCTTAGGGGATATTGTGTTGGCGATGATCAACGTCTTATTGTCTACGATTACATGCCAAATCTCAGTCTACTTTCTCATCTCCATGGCCAATTTACTGGTGAAGTGCAACTAAATTGGCAAAGGAGAATGAGCATCGCAATTGGCTCTGCCGAAGGCATTTTGTACTTGCATCATCAGGTCACACCTCACATCATCCATAGGGACATAAAAGCAAGTAATGTTTTGCTTGATTCAGATTTTGTGCCTCTAGTTGCTGATTTCGGGTTTGCAAAGCTAATCCCAGAAGGAGTAAGTCACATGACAACCCGTGTTAAGGGTACATTAGGATACTTGGCACCTGAGTATGCTATGTGGGGAAAAGTTTCCGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTACTAGAACTAGTAACCGGTAGAAAGCCGATAGAAAAGTTACCTGGTGGACTTAAGAGAACAATAACTGAATGGGCTGAGCCTTTGATAACCAAAGGAAGGTATAGGGATATGGTTGATCCAAAACTTAGAGGAAACTTTGATGAAAATCAAGTTAAACAAACGGTTAATGTCGCTGCTCTTTGCGTGCAAAGTGAACCTGAAAAACGACCAAACATGAAGCAAGTTGTTAATCTTCTGAAAGGACAAGAACCTGATCAAGGGAAAGTGACTAAGATGAGATTAGATAGTGTCAAATATAATGAAGAATTATTGGCACTTGATCAACCTAGTGATGACGATGATGATGATGATGATTATGATGGAAATAGTAGCTATGGTGTTTTTAGTGCTATCGATGTTCAGAAGATGAATGATCCTTTCAAGCGCGGTGATATCAAGAAAATCGGCTAA 1152 0.4045 MGSSLSCCGSEKVDEVPSSYGVANNSWRIFTYKELHTATNGFSDDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHNNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFTGEVQLNWQRRMSIAIGSAEGILYLHHQVTPHIIHRDIKASNVLLDSDFVPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGRYRDMVDPKLRGNFDENQVKQTVNVAALCVQSEPEKRPNMKQVVNLLKGQEPDQGKVTKMRLDSVKYNEELLALDQPSDDDDDDDDYDGNSSYGVFSAIDVQKMNDPFKRGDIKKIG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05357 383 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Trre15g05357 383 SUPERFAMILY Protein kinase-like (PK-like) 23 313 IPR011009 -
Trre15g05357 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Trre15g05357 383 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Trre15g05357 383 CDD STKc_IRAK 48 315 - -
Trre15g05357 383 ProSiteProfiles Protein kinase domain profile. 42 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05357 383 MobiDBLite consensus disorder prediction 340 360 - -
Trre15g05357 383 MobiDBLite consensus disorder prediction 340 355 - -
Trre15g05357 383 Pfam Protein tyrosine and serine/threonine kinase 47 313 IPR001245 GO:0004672|GO:0006468
Trre15g05357 383 Gene3D Transferase(Phosphotransferase) domain 1 118 330 - -
Trre15g05357 383 PANTHER OS01G0253100 PROTEIN 23 319 - -
Trre15g05357 383 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Trre15g05357 383 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Trre15g05357 383 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05357 Trre-Chr15 62657775 62659564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05357 1 358 Trihelix Transcription Factor Family AT1G70460 43.280 1.72e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trre15g05357 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05357 - - gmx:100783365 675.626