Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05356 ATGGAACTATCTTCCTCTTCTAGAATACTAATTGGTCTCTCATTAGACTCAAATGATAGCAAGGAGCTTTTATCATGGGCAATAAGAGTTCTAGCTAATCCAAATGATACTATTGTTGCAGTGCATGTTCTTGTTGGTGAGAATATGAAGAAACGTGTGTCAGTGAGAAGAAGACAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACTTGTTGGTCTAAACAGGTGAATTTGGAGGCAAAAGTGGCACTTAGTTCAACAGTAGGTGGTGGTTTAGTGGAGGAAGCCAAGTCAATTTCTGCTGATTTTCTTCTCCTTCGTGGATCAAGAAACAAAACAAATAAAATTGGAACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATAAAGATGAAGGCTGTACAATGATCTCAATTGGTAGGTACACAAAGTCAGAACAGAATTATGTCAATTCAAATTCCACACATTTTCAAGAAATGAATGCACAGAGCAGTTCGCCGAGAACAGTACTACTAGATGGACTAGAAGGACAATCCAACAGCACAGAAGATGATACATTTAGCACTAGAGCTTCAAGCATGACATATACACCTTCATCTGGTCCTAAGATTAAAAGAAAATCAAAGTTAAGAAAATCACAATTCTCATTCAGGTTCATAATATCATTCCTTGGTTCACCATTCAGAATAAAAAGCTTCAACATGTCCAAAATTGAAAAACATCAACCCTTGTTGAAGTGCTTCAGCTATGAAAACATATCAAATGCTACTAATGACTTTCACCAAGATAATATGGTTGGAAGAGGAGGGTACTCAGAAGTATACAAAGGTGTTCTTTGTGATGGAGAAACCATTGCTGTGAAGAGATTAGCCAAAGACAACAATGATCCAAACAAGGAAAGAGATTTTCTTATGGAGTTAGGTGTTATTGGACATGTGTGTCATCCTAATACTGCAACTTTATTGGGCTATTGCATTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGCTATGGTAAAGCAGGAAATTCACTTGACTGGCCAATAAGATACAAAATAGCTATTGGAATTGCAAGGGGTCTCCATTATCTTCATACATGTTGCAAACATCGAATAATTCATCGCGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACTGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACTCATCATGCTGTTATCCCAGTGGAGGGAACATTTGGATATCTTGCACCAGAAGTCTTTATGCATGGTATTGTGGATGAGAAAACTGATATTTATGCATTTGGCGTTCTTCTTCTCGAGATTGTTACTGGACGCAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGTGAGCTGGCAGATCCAAGAATGGAAGGTAGATATGATGCAGAGCAACTGTATAGGGTAATCCTAACTGCTTCATATTGTGTCAGACAAACTGCCATTTGGCGTCCTACAATGACCGAGGTGTTAGAGTTGCTAACCAGTGGCCAAGACTTCGAAGTTGGAAAGAGTCGGAGAATACCAAAGTTTACTTCTGAAGAATTGGATGATTACTCTATGATTTTTGGATATGATGTCCCCTCAGACATATCTCTAGAGGATTATTTGTGA 1746 0.3837 MELSSSSRILIGLSLDSNDSKELLSWAIRVLANPNDTIVAVHVLVGENMKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTVGGGLVEEAKSISADFLLLRGSRNKTNKIGTSKGITKYCFEHKDEGCTMISIGRYTKSEQNYVNSNSTHFQEMNAQSSSPRTVLLDGLEGQSNSTEDDTFSTRASSMTYTPSSGPKIKRKSKLRKSQFSFRFIISFLGSPFRIKSFNMSKIEKHQPLLKCFSYENISNATNDFHQDNMVGRGGYSEVYKGVLCDGETIAVKRLAKDNNDPNKERDFLMELGVIGHVCHPNTATLLGYCIENGLYLIFNYSQNGNLSTALHGYGKAGNSLDWPIRYKIAIGIARGLHYLHTCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIYAFGVLLLEIVTGRRPVDSSKQNILLWAKPLMESGNIGELADPRMEGRYDAEQLYRVILTASYCVRQTAIWRPTMTEVLELLTSGQDFEVGKSRRIPKFTSEELDDYSMIFGYDVPSDISLEDYL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05356 581 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trre15g05356 581 SUPERFAMILY Protein kinase-like (PK-like) 243 538 IPR011009 -
Trre15g05356 581 Pfam Universal stress protein family 8 117 IPR006016 -
Trre15g05356 581 Pfam Protein kinase domain 269 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05356 581 MobiDBLite consensus disorder prediction 185 211 - -
Trre15g05356 581 MobiDBLite consensus disorder prediction 185 216 - -
Trre15g05356 581 ProSiteProfiles Protein kinase domain profile. 269 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05356 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre15g05356 581 Gene3D Phosphorylase Kinase; domain 1 235 345 - -
Trre15g05356 581 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 346 552 - -
Trre15g05356 581 Gene3D HUPs 1 128 IPR014729 -
Trre15g05356 581 CDD USP_Like 8 119 - -
Trre15g05356 581 FunFam Putative receptor-like serine/threonine-protein kinase 236 345 - -
Trre15g05356 581 PANTHER OS08G0249100 PROTEIN 61 558 IPR046958 -
Trre15g05356 581 SMART serkin_6 269 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05356 581 Gene3D Transferase(Phosphotransferase) domain 1 347 552 - -
Trre15g05356 581 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05356 Trre-Chr15 62647808 62651692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05356 257 577 Trihelix Transcription Factor Family AT1G70460 39.233 1.42e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre15g05356 Pkinase 6.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05356 - - gmx:100782832 951.814