Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05352 ATGGTGTCTCCAAAAAGTATAGGAAAGTATAGAGTTAGCAGAACCATTGGAGAAGGTACATTCTCTAAGGTTAAACTTGCTTTCAATAGTAACAATGGTGAGAAAGTAGCAATCAAGGTCATTGACAAACAAATGGTCTTGAAAAATAATCTTAAGTATCAGGTACAAAGTGAGATTAGAACAATGAAACTTCTAAATCATCCTAATATTGTTAGAATTCATGAGGTTATTGGCACAAAAACAAAAATATACATTGTGATGGAATATGTATCAGGAGGTCAACTATTGGACAAAATGTCCTATGCAAAGTTAGATGAATGTGAGGCAAGAAAACTATTCCAGCAACTTATTGACTCCGTGGACTACTGTCATAACAAGGGAGTTTATCACCGCGATTTAAAGCCTGAAAATTTGCTCCTTGACAGCAAGGGAAACCTAAAAGTGTCTGATTTTGGATTAAGTGCATTGAAAAAGTCTGATGATGTTTTAAACACAAGGTGTGGATCCCCGTGCTACGTGGCTCCCGAGGTGCTGATGAGCAAAGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTCGAGTTACTTGCTGGTTTTCTACCATTTGATGACCAGAATTTGACGAGTTTATACCGTAAGATATGCAAAGCAGAATATATATGCGCCCCATGGTTTACTATAAGTCAAAAGAAACTAATCGCCAAAATACTTGAACCGCGTCCTCTAAAGCGGATAACTATTTCGGATATTATTGAAAATGAGTGGTTTCAAACAGATTATAAGCCTGTTTGCGTGTGTGAATTTGACCCGATCATTAACTTGGATGAAGATAGTGCTGCTTTTGACTCAATTGAGGAGAAAACTACAAAGTCAACGATAACAAAATCCTCGAGCTTCATTAATGCATTTCAACTGATAGCCATGTTTCAGGACTTTGATCTATCGTCCCTTTTCGAAGAACAGGCAAGTCTACAAATCTAA 996 0.3775 MVSPKSIGKYRVSRTIGEGTFSKVKLAFNSNNGEKVAIKVIDKQMVLKNNLKYQVQSEIRTMKLLNHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYAKLDECEARKLFQQLIDSVDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKSDDVLNTRCGSPCYVAPEVLMSKGYDGAAADVWSCGVILFELLAGFLPFDDQNLTSLYRKICKAEYICAPWFTISQKKLIAKILEPRPLKRITISDIIENEWFQTDYKPVCVCEFDPIINLDEDSAAFDSIEEKTTKSTITKSSSFINAFQLIAMFQDFDLSSLFEEQASLQI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05352 331 Gene3D Transferase(Phosphotransferase) domain 1 3 325 - -
Trre15g05352 331 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 324 - -
Trre15g05352 331 FunFam Non-specific serine/threonine protein kinase 3 302 - -
Trre15g05352 331 FunFam Non-specific serine/threonine protein kinase 2 89 - -
Trre15g05352 331 ProSiteProfiles Protein kinase domain profile. 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05352 331 ProSitePatterns Protein kinases ATP-binding region signature. 16 48 IPR017441 GO:0005524
Trre15g05352 331 Pfam Protein kinase domain 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05352 331 SMART serkin_6 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05352 331 SUPERFAMILY Protein kinase-like (PK-like) 7 295 IPR011009 -
Trre15g05352 331 Pfam NAF domain 303 326 IPR004041 GO:0007165
Trre15g05352 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trre15g05352 331 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05352 Trre-Chr15 62604807 62606809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05352 5 330 CBL-interacting serine-threonine protein kinases AT2G26980 53.030 8.46e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre15g05352 Pkinase 4.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05352 - - mtr:11440772 569.311