Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05351 ATGGTGTCTCCAAAAAGTATAGGAAAGTATAGAGTTAGCAGAACCATTGGAGAAGGTACATTCTCTAAGGTTAAACTTGCTTTCAATAGTAACAATGGTGAGAAAGTAGCAATCAAGGTCATTGACAAACAAATGGTCTTGAAAAATAATCTTAAGTATCAGGTACAAAGTGAGATTAGAACAATGAAACTTCTAAATCATCCTAATATTGTTAGAATTCATGAGGTTATTGGCACAAAAACAAAAATATACATTGTGATGGAATATGTATCAGGAGGTCAACTATTGGACAAAATGTCCTATGCAAAGTTAGATGAATGTGAGGCAAGAAAACTATTCCAGCAACTTATTGACTCCGTGGACTACTGTCATAACAAGGGAGTTTATCACCGCGATTTAAAGCCTGAAAATTTGCTCCTTGACAGCAAGGGAAACCTAAAAGTGTCTGATTTTGGATTAAGTGCATTGAAAAAGTCTGATGATGTTTTAAACACAAGGTGTGGATCCCCGTGCTACGTGGCTCCCGAGGTGCTGATGAGCAAAGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTCGAGTTACTTGCTGGTTTTCTACCATTTGATGACCAGAATTTGACGAGTTTATACCGTAAGATATGCAAAGCAGAATATATATGCGCCCCATGGTTTACTATAAGTCAAAAGAAACTAATCGCCAAAATACTTGAACCGCGTCCTCTAAAGCGGATAACTATTTCGGATATTATTGAAAATGAGTGGTTTCAAACAGATTATAAGCCTGTTTGCGTGTGTGAATTTGACCCGATCATTAACTTGGATGAAGATAGTGCTGCTTTTGACTCAATTGAGGAGAAAACTACAAAGTCAACGATAACAAAATCCTCGAGCTTCATTAATGCATTTCAACTGATAGCCATGTTTCAGGACTTTGATCTATCGTCCCTTTTCGAAGAACAGGATCACAAGAAGCAGACAACAATGTTTGGATCCCAACACACAATCAGTGAAACAGTAGAAAAAATAGAAGCTGCTGCAACAGATGTTAGACTGTCAGTAGAGAAAATGAACAACTTTAAGATGAAAATGCACCCAAAAACGTCGATGACTAGGTGTTCAAGATCATACTTTGACCTATCAGCTGAGGTGATAGAAGTTGCTCCAACTCATTGTGTTATACAAATATCAAAATCTGTAGGAGATCTAAGAATGTACAATGAATTTTGTGAAAGTTTATCAAGTCTGCTGATGGGAAATTCTGATATATCATCACAAGGCCAAGACTCTGTGGATCAAGGTGACTCTGGAAGCATAGAAAAACAAGATGCTGAAACAGCAGCAATTGTAATGTTTAGATAA 1377 0.3755 MVSPKSIGKYRVSRTIGEGTFSKVKLAFNSNNGEKVAIKVIDKQMVLKNNLKYQVQSEIRTMKLLNHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYAKLDECEARKLFQQLIDSVDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKSDDVLNTRCGSPCYVAPEVLMSKGYDGAAADVWSCGVILFELLAGFLPFDDQNLTSLYRKICKAEYICAPWFTISQKKLIAKILEPRPLKRITISDIIENEWFQTDYKPVCVCEFDPIINLDEDSAAFDSIEEKTTKSTITKSSSFINAFQLIAMFQDFDLSSLFEEQDHKKQTTMFGSQHTISETVEKIEAAATDVRLSVEKMNNFKMKMHPKTSMTRCSRSYFDLSAEVIEVAPTHCVIQISKSVGDLRMYNEFCESLSSLLMGNSDISSQGQDSVDQGDSGSIEKQDAETAAIVMFR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05351 458 CDD CIPK_C 306 424 - -
Trre15g05351 458 FunFam Non-specific serine/threonine protein kinase 300 425 - -
Trre15g05351 458 Pfam Protein kinase domain 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05351 458 Gene3D Kinase associated domain 1, KA1 300 424 - -
Trre15g05351 458 ProSiteProfiles Protein kinase domain profile. 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05351 458 ProSitePatterns Protein kinases ATP-binding region signature. 16 48 IPR017441 GO:0005524
Trre15g05351 458 FunFam Non-specific serine/threonine protein kinase 3 302 - -
Trre15g05351 458 Coils Coil 454 458 - -
Trre15g05351 458 SMART serkin_6 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05351 458 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Trre15g05351 458 Gene3D Transferase(Phosphotransferase) domain 1 92 274 - -
Trre15g05351 458 SUPERFAMILY Protein kinase-like (PK-like) 7 299 IPR011009 -
Trre15g05351 458 FunFam Non-specific serine/threonine protein kinase 2 89 - -
Trre15g05351 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 413 - -
Trre15g05351 458 Pfam NAF domain 303 361 IPR004041 GO:0007165
Trre15g05351 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trre15g05351 458 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05351 Trre-Chr15 62597471 62606809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05351 87 422 CBL-interacting serine-threonine protein kinases AT5G57630 61.834 3.64e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre15g05351 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05351 - - mtr:11440772 767.303