Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05345 ATGGGCAGAGCTCCATGTTGTGACAAAGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGACGCTACACTCAAATCTTACATTGAAACAAATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACGGATAATGACATAAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGGAAGCGAAAACAATCGAATAACAATAACAACTTGATGAATCAAAAGGATACAAATGGAATAGATGAAAATTCTTATTCAAATTCTTTAAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAATCTCTTCAAAACCCTTTCTCTTTTTACAATAATAACCCTGGTTCACTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAATTCTAATAATATTATTAACCCTATGTTGCAAAATGCTTTCACTTCACCACAGGTTGATGTTTTGGAGAATATTAATATTCCTTTGGAGAATAATAATATTAACAATTCAGTTACCTTTAATGCTTCTGGAAATAATGATAATAATAATAATTATAATTCAATGCATTCTTCAATTGTTGCACCAAGAGGAGAAGGTGTTGAGATCAAGAGTAGTACTAATGAAGGAATTCAACAACTGGAAAATGAACTTGATGAGATTCTCAACAATAGAAATATTATTACTACTCCAACAATGGAAGATGAATTTGATTGTTTCAGAGATATTAATAATAATGATGGTTCAAAGGATGATCAAAGCATGATATGGTGGTCAAATGATTCAGGTGATACTACTAAATCTGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAAGATCAAGGAATGTTCCAAGATTATGAACTAGGTTACACTATGTAG 1080 0.3361 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNNNLMNQKDTNGIDENSYSNSLSSSALERLQLHMQLQSLQNPFSFYNNNPGSLVWPKLHPSQEKMIQISLQNSNNIINPMLQNAFTSPQVDVLENINIPLENNNINNSVTFNASGNNDNNNNYNSMHSSIVAPRGEGVEIKSSTNEGIQQLENELDEILNNRNIITTPTMEDEFDCFRDINNNDGSKDDQSMIWWSNDSGDTTKSGSSNSWDSSTNLMQDQGMFQDYELGYTM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05345 359 Coils Coil 267 287 - -
Trre15g05345 359 CDD SANT 71 111 IPR001005 -
Trre15g05345 359 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre15g05345 359 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre15g05345 359 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre15g05345 359 MobiDBLite consensus disorder prediction 313 342 - -
Trre15g05345 359 MobiDBLite consensus disorder prediction 122 146 - -
Trre15g05345 359 Gene3D - 7 68 - -
Trre15g05345 359 FunFam Transcription factor RAX3 7 68 - -
Trre15g05345 359 CDD SANT 16 62 IPR001005 -
Trre15g05345 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre15g05345 359 MobiDBLite consensus disorder prediction 120 146 - -
Trre15g05345 359 SMART sant 13 64 IPR001005 -
Trre15g05345 359 SMART sant 67 115 IPR001005 -
Trre15g05345 359 Gene3D - 69 143 - -
Trre15g05345 359 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre15g05345 359 FunFam Transcription factor MYB36 70 140 - -
Trre15g05345 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre15g05345 359 PANTHER OS09G0431300 PROTEIN 1 286 - -
Trre15g05345 359 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05345 Trre-Chr15 62555233 62556779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05345 1 186 MYB Transcription Factor Family AT5G57620 76.064 2.47e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g05345 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05345 K09422 - gmx:100783440 428.328