Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05344 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGATTGTAATTGATCATAGACACCATTTTATTATGATGGATAGTCCTACAGCTGTTAGATCGCCGGCCACAGCCACCACAACCGGTTCTGGTTCCGGTTCAAATGACGATGGCCGGCGTGTTAAATTTTTGTGTAGTTTTCTAGGTAGTATAATGCCACGTCCACAAGATGGGAAACTACGTTATGTTGGTGGAGAGACAAGAATTGTGAGTGTTTCTAGAGATATTAGTTTTGAGGAGTTAATGGGGAAGATGAGGGAGTTGTATGAAGGTGTTGCTGTGTTGAAGTATCAGCAACCTGATGAAGATCTTGATGCACTTGTATCTGTTGTTAATGATGATGATGTGGTTAACATGATGGAAGAGTATGATAAGTTGGGTTCAGGGGATGGGTTTACTAGGCTTAGGATTTTCTTGTTTTCGCAATCCGAGCAAGATGGTTCCGCACACTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTCGATGCGTTGAATAGTTTAAATGATGCTTCTGAGTTACGGAGGTTGCAACAAATGGAGTTTCCTATGATTGGTACTATTGAGGATATCCATGTGGCTGATCCGTTCATTAATCCTATCGCCGTGGAAAATGGGATTCATAGCCAGAGAAGCGGGGAACTAGGCATGTCACAGTATAGTTTGCATCATATCCCTATCCCGCACCAGCAACCTATGGGTCAGAGGTATAATGAAATCGATGCTCAGTGGAATCCTGGTTATTACTCTCCTAGGCATCATGGTCAGTGTCACCATGACTCCAGATCATCATTGGTTGACTATCCATCTTCTCCGTCTGGCACAAGATACCGCGTGCCATTTCCTGAGATGCCAGATAAGGGCATTGATAGAGTGCCAGACGAATATGCTCGACATCACGTAAATCACCATTCTTTATACGACAATCAACCACAGTATCCTGAAAACGTTGTGTGGCTGCCAACTGGAGCAGCACATGGTGATAAGTCCGGTTTTCCAGGCAACCTTATTCATGGTTCTCATGCTCTTGATGGGAATAATATATGTGAGCACTGTCGCATGGGTTTTCAGAGAGCTCAACCGCATTTGGAGCATACTAATATGCTTCCGCCTGTTGCCATTCCATGTCCGGAATGCCCCTCAAGCAGGGATGCTCTCGCAGTGAATGCTGATGGCAAGTTACAGCCTACATTATATCCCAATGATACTCAAAATCATGAGAGAGGATGTGGTTTGCAGCATCAGGGTTCTGGAAGAGTGAGTGATCATTATGTTGGCGATGTTCCTATTATTAATTTCCCTCATGTACATGGTAGTATTATTGATGGACATGTTCTTCCTTCCAATCATGTTCATCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCGCGTCTAAAAATTCCTCCATTGGAAGAATGCAGTGTGCAGTATGGAAAGACATCTTCTCCTTATGGAGCAGATAATAATTACGCTGTGCCTTGTGGACATGCACCTGGTTACACTCTTTGGAGAAACGGTCCGACTCCAGTTCATATTGGATCACCACACGAGGCAACTACTCCACATCAGCCAGTTGATGGTGTGATAAATACTGGAATAATCAGGGGAGAGGGCAGTCCAGGTTTTTTCGTCGGACCGGATAGTCAAAGTCTTTGGGTTGATTCGTCACAGAAATTTTCAGGTCATGATGGGTCAGCCATCTCCGAATACCCTTATGCAAATGCTCCGAAGTTGAATCCAATGACCAACGGTCAGGAAAATCAACACCCAATTATTTTAGATGCCATTCATCCTCCACAGGAAGTAAACACTGGTACCTGCTTGGAACCTGTGCAGCTGCAAAAAACTTCTCTTAATATGGTTCACAATAATGAGGTTCTAAAAATTGATACTCATTTGACTGAAGTGATCAGTTTGCAATCTATAAGTTTGCTTGGAGAAGGAAAAGAAACAAAAAATAAGGATAATGTTGAGAACTCAAATGTGCAGAATCTATCCAACGCTGTTGTTGCTTCTGCTGAGTGTAAAAATTCATTTTTGAAACCCGCATCGGAGTGTGGACATGTCGAAAAACTGGTCGATAAGGACTTTACTGCTCATGAAGATTCTAAGCATTTAGCCGATCAATTCAATATCTTGCCTGAGTTAATTGCTTCTGTTAAAAAGGCTGCGTTAGAATGTCACGATGAGGTGAAACCTACATGTGAAGAGCGTGTCAATTGTCAGATTGATAATTCAAATACCAAAGAAGAAACAGCAAATGAAGTTGAACCAGTGAATGCTAATGGTGGTTTAGAATTGGACACTGAAAATGACCGTGTTGATACTTCTAAAATCGAGCCTACAAAGGCTGAGGCAGAAGCAATTGCTAGGGGATTACAGACAATTAGAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTATGGGGCTGTTTATCATGGGAAATGGAAAGGTTCCGATGTCGCCATTAAGAGAATAAAAGCCAGTTGTTTTTCTGGAAGACCATCAGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTAATGCTGAGTTCATTGCATCATCCGAATGTTGTCTCCTTCTATGGTATTGTTCGTGATGGCCCTGATGGGTCTTTAGCAACAGTGACAGAATTCATGGTGAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGAAAGAACATAGTGCATTTTGATTTGAAATGTGAGAATCTATTAGTCAACATGAGAGATCCACAACGACCTGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTAAAGCAGCACACACTAGTGTCTGGAGGGGTACGCGGAACTTTACCTTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAGAAGATCGATGTTTACTCTTTCGGGATAGTCATGTGGGAATTACTCACAGGGGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCTCAAATCCCAACATGGTGCGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCCGATCCTACAGAAAGGCCATCATTTGCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTTCAGTGAATGTGAAATAG 3291 0.4278 MCNKGFQCLSESEIVIDHRHHFIMMDSPTAVRSPATATTTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSAHFIDGDDPERRYVDALNSLNDASELRRLQQMEFPMIGTIEDIHVADPFINPIAVENGIHSQRSGELGMSQYSLHHIPIPHQQPMGQRYNEIDAQWNPGYYSPRHHGQCHHDSRSSLVDYPSSPSGTRYRVPFPEMPDKGIDRVPDEYARHHVNHHSLYDNQPQYPENVVWLPTGAAHGDKSGFPGNLIHGSHALDGNNICEHCRMGFQRAQPHLEHTNMLPPVAIPCPECPSSRDALAVNADGKLQPTLYPNDTQNHERGCGLQHQGSGRVSDHYVGDVPIINFPHVHGSIIDGHVLPSNHVHQQVGPELGVELFPDQTMAAIPRLKIPPLEECSVQYGKTSSPYGADNNYAVPCGHAPGYTLWRNGPTPVHIGSPHEATTPHQPVDGVINTGIIRGEGSPGFFVGPDSQSLWVDSSQKFSGHDGSAISEYPYANAPKLNPMTNGQENQHPIILDAIHPPQEVNTGTCLEPVQLQKTSLNMVHNNEVLKIDTHLTEVISLQSISLLGEGKETKNKDNVENSNVQNLSNAVVASAECKNSFLKPASECGHVEKLVDKDFTAHEDSKHLADQFNILPELIASVKKAALECHDEVKPTCEERVNCQIDNSNTKEETANEVEPVNANGGLELDTENDRVDTSKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFSGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPTERPSFAEISKKLRSMAASVNVK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05344 1096 ProSiteProfiles Protein kinase domain profile. 823 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05344 1096 ProSitePatterns Protein kinases ATP-binding region signature. 829 850 IPR017441 GO:0005524
Trre15g05344 1096 SMART serkin_6 823 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05344 1096 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 816 910 - -
Trre15g05344 1096 CDD PB1_UP2 56 152 - -
Trre15g05344 1096 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 911 1096 - -
Trre15g05344 1096 Gene3D Transferase(Phosphotransferase) domain 1 910 1095 - -
Trre15g05344 1096 PANTHER SERINE-THREONINE PROTEIN KINASE 108 1089 - -
Trre15g05344 1096 Pfam PB1 domain 68 153 IPR000270 GO:0005515
Trre15g05344 1096 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 72 154 - -
Trre15g05344 1096 SUPERFAMILY CAD & PB1 domains 69 158 - -
Trre15g05344 1096 CDD STKc_MAP3K-like 829 1086 - -
Trre15g05344 1096 MobiDBLite consensus disorder prediction 265 297 - -
Trre15g05344 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Trre15g05344 1096 Pfam Protein tyrosine and serine/threonine kinase 824 1086 IPR001245 GO:0004672|GO:0006468
Trre15g05344 1096 SMART PB1_new 67 152 IPR000270 GO:0005515
Trre15g05344 1096 PRINTS Tyrosine kinase catalytic domain signature 1057 1079 IPR001245 GO:0004672|GO:0006468
Trre15g05344 1096 PRINTS Tyrosine kinase catalytic domain signature 942 960 IPR001245 GO:0004672|GO:0006468
Trre15g05344 1096 PRINTS Tyrosine kinase catalytic domain signature 1013 1035 IPR001245 GO:0004672|GO:0006468
Trre15g05344 1096 PRINTS Tyrosine kinase catalytic domain signature 905 918 IPR001245 GO:0004672|GO:0006468
Trre15g05344 1096 Gene3D - 71 155 - -
Trre15g05344 1096 Gene3D Phosphorylase Kinase; domain 1 808 909 - -
Trre15g05344 1096 SUPERFAMILY Protein kinase-like (PK-like) 815 1084 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05344 Trre-Chr15 62542500 62547089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05344 47 1096 MAP Kinase Kinase Kinase AT5G57610 54.022 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre15g05344 PK_Tyr_Ser-Thr 6.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05344 - - tpra:123909448 2053.48