Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05328 ATGAATAATTTTCATCCTAATACTTCTCTTAATCTTAATCTAGATCTTGTCCTTGAACCATCTTCTTCTTCATCATCATCATCTTCACCTATTGTTGAACAAAGAATATTTTCATGCAACTATTGTCAAAGAAAGTTTTATAGCTCACAAGCTTTGGGAGGACACCAAAATGCTCATAAGCTTGAAAGGACACTTGCAAAGAAAAGCTGGGAGATAAGTTCAACCATGCAATCTTCTAATTATGTTGAATTACCAGAACACCCTTCATCAAACTTCAATGCTCATTTTGATCATAATAACATTAATCATGTGATGAGACATGGTGGTGGAAGAAAAGATAAGTTTAGTTATGGTAATTCTAAGGAAGGTGTGACTTCTTGGTCAAGGGGTTATAATACTACTTCTGAACATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTTTAA 456 0.3421 MNNFHPNTSLNLNLDLVLEPSSSSSSSSSPIVEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSWEISSTMQSSNYVELPEHPSSNFNAHFDHNNINHVMRHGGGRKDKFSYGNSKEGVTSWSRGYNTTSEHVQEDISQLDLSLRL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05328 151 SUPERFAMILY beta-beta-alpha zinc fingers 33 64 IPR036236 -
Trre15g05328 151 FunFam Zinc finger protein 2 16 83 - -
Trre15g05328 151 Gene3D Classic Zinc Finger 11 93 - -
Trre15g05328 151 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 96 IPR044246 GO:0009788
Trre15g05328 151 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Trre15g05328 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05328 Trre-Chr15 62447239 62447694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05328 3 151 C2H2 Transcription Factor Family AT5G57520 49.091 4.89e-26 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g05328 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05328 15 62447239 62447694 Trre15g05328 15 62447239 62447694 ECH