Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05327 ATGTCACAAGAGGAATTCATCTTCCGTTCAAAACTCCCAGACATTGAAATCCCAACGCATCTTCCGTTACATTCTTACTGTTTCCAAAACCTCTCTCAATTTCATAACCGTCCATGTCTCATCAACGGCGACTCCGGCGAAATTTTAACATACTCCGACGTCCACCTCACCGTCCGCAAAATTGCTGCCGGTTTAAACACTCTCGGAATCAATCAAGGTGATGTCATCATGCTCGTCCTCCGTAACTCACCTCAATTCGCACTCACTTTCCTCGGTGCTTCTTTCCGCGGCGCCGTTATCACCACCGCAAATCCTTTCTACACCTCATCGGAACTCACGAAACAAGCCACAGCTACAAAAACTAAACTCATCGTAACTCAATCCGCATATCTCAATAAAATCAACGATTTCGCTAAATTCAACAACATCAAAATCGTCTGCGTAGACTCATCATCGCCGCCATCACCGTCGTCGATATCAGAAGAAGTCACCGGTGTTGTGGATTTTTCAGTTTTAACAAATGCTGATGAAAACGATTTACCAGAAGTTAAAATAACGGCTAACGACGTCGTTGCGTTACCGTTTTCTTCAGGTACTTCAGGACTTCCAAAAGGCGTTATGTTAACACATGAAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCACACCAATACACTAACGGCGAGGATGTGTTACTCTGTGTGTTACCTATGTTTCATATCTATGCACTGAATTCAATTTTACTATGTGGAATTCGTTGTGGTGCTGCGGTTTTAATTGTGGAGAAATTTGAGATTAAAACGTTATTGGAACTTATTGAAAAGTATAAAGTGACGGTAGCGTCGTTTGTGCCACCAATTGTTTTGGCGTTGGTAAAAAGTGGTGAATCAAATAAATATGATTTGTCGTCTATTAGAGCGATGATTACTGGTGCTGCACCTATGGGAATGGAACTTGAACAAGCTGTAAAGGATAGATTGCCACATACAGTGCTTGGTCAGGGATACGGCATGACAGAGGCAGGACCACTATCAATTAGCCTTGCATTTGCAAAGGAACCATTCAGAACAAAACCTGGTGCATGTGGCACCGTCGTAAGAAACGCCGAGATGAAAATTGTTGATACAGAGACTGGTGTTTCTCTTCCTAGAAACAAAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATACCTAAATGATCCCGAGGCGACAAAGAGAACTATAGACGAAGAGGGATGGCTACACACAGGTGACATTGGTTTGATTGATGACGATGATGAACTCTTCATTGTTGATCGATTAAAAGAATTGATCAAATACAAAGGATACCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTGATTTCACACGCGAACATTTCTGATGCTGCTGTTGTACCATTGAAAGATGAAGTTGCTGGAGAATTACCGGTAGCATTTGTTGTAAGATCAAACGGTTCAAAGATCAGTGAGGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAAAGAATAAACAGAGTTTATTTCACAGACACTATTCCTAAAGCGGCCTCTGGCAAAATTCTGCGAAAGAAATTAACCGAAAGACTTAACGAAGGTTTGGTGGTGGCCACTTAA 1653 0.4138 MSQEEFIFRSKLPDIEIPTHLPLHSYCFQNLSQFHNRPCLINGDSGEILTYSDVHLTVRKIAAGLNTLGINQGDVIMLVLRNSPQFALTFLGASFRGAVITTANPFYTSSELTKQATATKTKLIVTQSAYLNKINDFAKFNNIKIVCVDSSSPPSPSSISEEVTGVVDFSVLTNADENDLPEVKITANDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNGEDVLLCVLPMFHIYALNSILLCGIRCGAAVLIVEKFEIKTLLELIEKYKVTVASFVPPIVLALVKSGESNKYDLSSIRAMITGAAPMGMELEQAVKDRLPHTVLGQGYGMTEAGPLSISLAFAKEPFRTKPGACGTVVRNAEMKIVDTETGVSLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDEEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAELEALLISHANISDAAVVPLKDEVAGELPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFTDTIPKAASGKILRKKLTERLNEGLVVAT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05327 550 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Trre15g05327 550 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Trre15g05327 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 540 - -
Trre15g05327 550 SUPERFAMILY Acetyl-CoA synthetase-like 12 544 - -
Trre15g05327 550 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Trre15g05327 550 CDD 4CL 17 538 - -
Trre15g05327 550 Gene3D - 1 442 IPR042099 -
Trre15g05327 550 Gene3D - 443 547 IPR045851 -
Trre15g05327 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 9 443 - -
Trre15g05327 550 Pfam AMP-binding enzyme 30 448 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05327 Trre-Chr15 62432285 62438331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05327 5 510 Monolignol Biosynthesis Gene Families AT1G51680 63.405 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05327 K01904 - gmx:100810418 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05327 15 62432285 62438331 Trre15g05327 15 62432285 62438331 ECH