Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05315 ATGGATGAAGAGTGCTCAATTGTTCTTCAGTTATCTGAAAATGATCCTTTTTTTGATGAAAAGAAGAAATTACTACAATGTAAGGGGTTTAGTCCCAAGGAACGGATATATCTTAGGTGCTCCTCAGGACCTCATTGGATGAATGATGCTGTAAAGAACTTACTTCCGATTGCAAGGATCATACAATTAAACGAGCTGGAACTATATTTTGCTGAAGACGATGCCTCGGTGGAGTTTTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACCGACAAATTACTTTCTAGTTGTCAACATTCCCACACAAATATCCTGCAAGGGTTACGGCAAACGATTTTTGATTTAATTTCTGGTTTTGGGGACCAAAATAATCTGAAGGGAGTACTTGAAAAGTACCACAGTTGTGAGAAAGAAGAACACCTGATCGAGTGGGGTAAAAGCCATGGTGTAAAGACACAATTAAAGATAGCTTATGTTGAAGGAGCAGGCCGGGGAATGATATCAGAGAAAGATCTAAAAGTTGGAGATATTGCTTTAGAAATTCCTGTGTCCATTATCATTTCCGAGGAGCTTGTGCTTGAAACTGAAATGTATCGTGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAGAAGTACAACTGTGATTCAAAATTCAAAAGTTACTTTGACACACTTCCAGAAAAATTTAATACAGGATTGAGTTTTGGGATTGAAGCAATTACAATATTAGATGGAACTTTGCTGTTTGAAGAAATAATGCAAGCAAGACAGCACCTGCATGCTCAGTATGATGAGTTGTTTCCTGCTCTGTGCAATGGCTTTCCTGATATATTTCCTCCAGAGATGTACACGTGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTATTCCAATAGCATGAAGATAATGTTTTCAGATGGAGAACTGAGGACATGTTTGATCCCTCTTGCTGGTTTTCTTAATCATTCACTGTGCCCACATATTATGCACTATGGCAAAGTAGATTCTTCAACAAATTCATTGAAATTTGGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGTTACGGGAACTTCTCCAGCTCTCATTTTATTACATTTTATGGTTTCTTACCTCAAGGAGACAACCCGTATGATGTCATTCCTTTAGACATTGATAGTTCAGATATTGATTCTAACGAGGATAAACCTGTGTCCAATTGGGCGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCATATTCTATTATGGCCTTCCCTCTCCATTATTGAATCACCTTCGGAGATCTCGAAGTCCCGTGCTGAAAACAAAGACTGTCTTGCAAGGAAACTTGGAAAATGAGCTAGAAGTACTTGGAGATCTTAAAGACATCTTTGATGCCATGATGGAAAATATGGGTGATATCGATCTTGATAACAGCGAAAACTACAATTGGGATGAAAAATTGGCTGTGGATTTTAAAAGTCTACAAAGACGAATTGCTCATTCCATTTCAACTTCATGTGAAACTGGAGTAAGCATGTTGAAGAATGAACTGCACAAGTGTTTGGCTGAGGACATCCTAGGCTAA 1638 0.3877 MDEECSIVLQLSENDPFFDEKKKLLQCKGFSPKERIYLRCSSGPHWMNDAVKNLLPIARIIQLNELELYFAEDDASVEFYSPRNELEALNSIVLLTDKLLSSCQHSHTNILQGLRQTIFDLISGFGDQNNLKGVLEKYHSCEKEEHLIEWGKSHGVKTQLKIAYVEGAGRGMISEKDLKVGDIALEIPVSIIISEELVLETEMYRVLKEVDGISSETILLLWSMKEKYNCDSKFKSYFDTLPEKFNTGLSFGIEAITILDGTLLFEEIMQARQHLHAQYDELFPALCNGFPDIFPPEMYTWEKFLWACELWYSNSMKIMFSDGELRTCLIPLAGFLNHSLCPHIMHYGKVDSSTNSLKFGLSRPCRSGEECCLSYGNFSSSHFITFYGFLPQGDNPYDVIPLDIDSSDIDSNEDKPVSNWATHMVRGTWLSNNHSIFYYGLPSPLLNHLRRSRSPVLKTKTVLQGNLENELEVLGDLKDIFDAMMENMGDIDLDNSENYNWDEKLAVDFKSLQRRIAHSISTSCETGVSMLKNELHKCLAEDILG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05315 545 Gene3D - 2 117 IPR036464 -
Trre15g05315 545 FunFam Transcription factor, E2F and DP-related 142 390 - -
Trre15g05315 545 FunFam SET domain-containing protein 2 137 - -
Trre15g05315 545 Pfam Rubisco LSMT substrate-binding 13 106 IPR015353 -
Trre15g05315 545 Pfam SET domain 169 376 IPR001214 GO:0005515
Trre15g05315 545 ProSiteProfiles SET domain profile. 158 376 IPR001214 GO:0005515
Trre15g05315 545 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 142 488 - -
Trre15g05315 545 CDD SET_LSMT 160 390 - -
Trre15g05315 545 SUPERFAMILY SET domain 143 397 IPR046341 -
Trre15g05315 545 Gene3D set domain protein methyltransferase, domain 1 141 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05315 Trre-Chr15 62341820 62347663 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre15g05315 SET 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05315 K19199 - gmx:100778605 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05315 15 62341820 62347663 Trre15g05315 15 62341820 62347663 ECH