Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05307 ATGAATAGCTTTGACCCCCAAAGATGGCAACAAGATCATAGAAGACAGAAAAATATCATAGGTGCATCATCATCATCATCTTCAAATAATTCTTTTAATTTCTATGGCAACAATGATAGTATTAGTAACAACACTAATATGGGAAAGTACAAGAAACTTATGCTTGAGGATGATGATCTTGTGTCCACTGTAGTTCCTGCAGTTACAGTAGTCTTGGAGGGCCGTTCGATCGGCCAACGCATCAACCTTCATAACCATGGTAGTTACCAAAGTCTCGCCAAGGCTCTCCGCCAGATGTTTGTCGACTGCACGGACGATGACCGCGCCGCCAATGATCATCTTGATCTCTCTAATGCCATTCCTGGTCATCTTATTGCCTATGAAGACATGGAAAATGATCTTCTTCTAGCTGGTGATCTTACCTGGAAAGATTTTGTACGTGTGGCAAAGAGAATAAGGATACTTCCAGCAAAGGGGAATTCAATGAAAGGTACAACAAGTACAAGAGATGCATAA 516 0.4128 MNSFDPQRWQQDHRRQKNIIGASSSSSSNNSFNFYGNNDSISNNTNMGKYKKLMLEDDDLVSTVVPAVTVVLEGRSIGQRINLHNHGSYQSLAKALRQMFVDCTDDDRAANDHLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPAKGNSMKGTTSTRDA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05307 171 Gene3D - 61 168 - -
Trre15g05307 171 ProSiteProfiles PB1 domain profile. 65 159 IPR000270 GO:0005515
Trre15g05307 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 157 IPR003311 GO:0005634|GO:0006355
Trre15g05307 171 Pfam AUX/IAA family 17 155 IPR033389 -
Trre15g05307 171 SUPERFAMILY CAD & PB1 domains 70 154 - -
Trre15g05307 171 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05307 Trre-Chr15 62287634 62288716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05307 21 155 B3 DNA Binding Superfamily AT1G19850 27.407 1.01e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre15g05307 AUX_IAA 7.8e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05307 - - ahf:112698078 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05307 15 62287634 62288716 Trre15g05307 15 62287634 62288716 ECH