Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05293 ATGACTACTCCGTTTGATATGCTCGGTTCTGTGAGTGCTGGCAAAGAGACTTGGCGTATCAAGGTCCGTGTGCTTCGTCTGTGGACTGCTTCCTCTTTCATGAAACCTGATCAAATCAATTCGATTGAGATGGTGCTCATTGATGAAAAGGGTAGTAAGATCCATGCTTCTATTCGCCGTCAACTGTTGTATTTGTTTAGTTCGAAAATTGCTGAAGGGAATGTTTATAAGATGTCATATTTCACTGTAGTCCGTGAATCTGATTGCTATGGATTGTCGGTTTCCCCTATTGCAGCTGTTGTTGCCTATGGAGCTGATCACGATTTTTTAGTTGATGTTGCTGCTGTGATTACTGGTATGTCTCCTGAGAGAGAATATATTCGTGATGGAAAGGTTACTAAGATGATTGCTATTGAGCTGACTGATAATAGTGGAAAGATTGAGTGTGCACTATTTGGTGATTATGTATCTATTCTTCAAGGAATGTTGGCCAATGTTGGCGATGGATTGCCTGTTGTTGTAGTCCAGTTTGCCAAAATAAAGATATTTGCAGGTAAAATGTCAATTCAAAATGTTCTTAGTGCTACAAGGATTTATGTTAATCCTTCCATACCAGAGATTGTTTGTCTCAAAGAAGTATTGGTGGCTTGCGGCCTTGATTCTTCTGTCTCTATCCCTGTATTGGGACCTCGTGTTAGGCCTCCTTTGGAAGATGATTTTTTGAACAATTATCCAAGGGCTACCATATCTAACTTAGTTGGACTTGCTGAGGATGGTACTTATGTGCTAAGTGCTGTTGTTGATGGGCTGGTTGATGCTGATGAGTGGTGGTATCCATCGTGTAGATGTCATAGGAGTCTTACTCCTGATTCAGGGGCATATTACTGCAAGTTTTGTGTTAAGCATGTTTCCAAAATGGTTCCAAGGTTTAGGGTAAAACTAAGTGTTGATGATGGAACTGCTAAAGCTGTTTTTGTTGTTTTTGATTCTGATATGCATGCTATGCTTGGGAAACATTGTTTTGAATTGGTTGCTGATTCTAAGGTTGAAAATGCTGCACATTATCCTCCTGAATTTGATTCCATTAAAGGGATGAGGTTTTTGTTCAAGGTTTCCAAAGTTTCATCTGGAGCTTTAAGGTTTGATGATTCTTTTAAAGTTAAGAGGATATGCAGTGATGCCTCTATTTTGGAAGCTTTTAATGCTCTTGCATCTAAAGATGATTCCATTGGAGGTGAAGAAGAAATTGCTGATGATACTGAGATTGAGGAGGAATTTGTTTCCAATCTTATTGTAACACCTACTTCTGCTGAAGCTAAAGATGAAGTTGATGTGTCTCCTACCAAATATGTTCCAGAAATTTTTAAGTTGGATGATGACAATGATGATGATGTTGAAATCTTTGTTCCTGGTGGGATTGGGATTGAGTTCGATCGAGCGTTTGCTGCCAAGAGGAATTTGTCTGCTGCTTTTGATGAATGTTCTAATGATGAAGGAAGTTCTTCCAAGATCAGCAAACTTTCACCGGAATGA 1533 0.3927 MTTPFDMLGSVSAGKETWRIKVRVLRLWTASSFMKPDQINSIEMVLIDEKGSKIHASIRRQLLYLFSSKIAEGNVYKMSYFTVVRESDCYGLSVSPIAAVVAYGADHDFLVDVAAVITGMSPEREYIRDGKVTKMIAIELTDNSGKIECALFGDYVSILQGMLANVGDGLPVVVVQFAKIKIFAGKMSIQNVLSATRIYVNPSIPEIVCLKEVLVACGLDSSVSIPVLGPRVRPPLEDDFLNNYPRATISNLVGLAEDGTYVLSAVVDGLVDADEWWYPSCRCHRSLTPDSGAYYCKFCVKHVSKMVPRFRVKLSVDDGTAKAVFVVFDSDMHAMLGKHCFELVADSKVENAAHYPPEFDSIKGMRFLFKVSKVSSGALRFDDSFKVKRICSDASILEAFNALASKDDSIGGEEEIADDTEIEEEFVSNLIVTPTSAEAKDEVDVSPTKYVPEIFKLDDDNDDDVEIFVPGGIGIEFDRAFAAKRNLSAAFDECSNDEGSSSKISKLSPE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05293 510 CDD RPA1_DBD_A_like 19 85 - -
Trre15g05293 510 Pfam Domain of unknown function DUF223 43 88 IPR003871 -
Trre15g05293 510 Gene3D - 7 96 IPR012340 -
Trre15g05293 510 Gene3D - 240 392 IPR012340 -
Trre15g05293 510 SUPERFAMILY Nucleic acid-binding proteins 4 83 IPR012340 -
Trre15g05293 510 PANTHER OS03G0429900 PROTEIN 273 379 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g05293 510 SUPERFAMILY Nucleic acid-binding proteins 244 372 IPR012340 -
Trre15g05293 510 Gene3D - 97 217 IPR012340 -
Trre15g05293 510 SUPERFAMILY Nucleic acid-binding proteins 96 214 IPR012340 -
Trre15g05293 510 CDD RPA1_DBD_C 250 372 IPR047192 -
Trre15g05293 510 CDD RPA1_DBD_B_like 112 214 - -
Trre15g05293 510 Pfam Replication factor-A C terminal domain 265 372 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05293 Trre-Chr15 62226259 62228662 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05293 1 337 Core DNA Replication Machinery Family AT5G08020 23.454 3.47e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05293 - - tpra:123893724 595.119