Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05286 ATGGACTCATCCTCTTCTTCACCCCCCACACATACTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATACTCATTTTCCTAATATTCCTTCTCACTCTTCTTCCTCTCACCTCTCTCTTTTTCACTCATTCACCACTTTTCCTCCATTAACACCACCATCTCTCACTCTCACAGGAAGCAACACCGTAGATACATCACAGGAGGCAACTGAAGAAGGAACCACCAACCTCTCCATATTCAGCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCTCCGTCGCAACAACAACCGCCACCACGTGTGCACCAACACAGCTTCATCAGTTTTCCACCGACATATACGATTCGGAGCTAAAGAAAACAATATCTGCTTGCTTCCAAGGTGGTTACCCCACCGAACCAAACTCCGAACCTCGGAAACTGTCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGCACTTCAATCTATCGAGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGTAGAAGAGAAGGACAAAGCAGAAAAGGAAGACAAGGTACTATATATGCTAATTTAAGTGGCTATGACAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGCTATGACGTAAAGAGCATTGCAAACAGTTCACTTCCAATAGGTGGTTTATCAAACAAGAACAACAAAAATTCAACAGATTCATCGGTATCAGAAATCAAAAGCCTCGAACCAATTCAGTCCGATGAAAGGGATCATCCATCATCAGTTTCATCAGCGACAACTTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCTAACATTCTCAGATTCCATAACAGTAATAATAATAATAATAATAATAATAATAATATTTCTAGCGTTGTTACTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTTCAAATACCAACAATGATAATCAAAATGCAGGGTTTTTCAGTGGATCAGGTATCTTAAATGTTCATCAACAAAATGGTTCTTCATCTGCATCTGCATCATCTTCAACAAGTAGTTCAATTCCATATGCTACACCAATATTTTCTTTAAATAGTAATAGTAGTTATGATCAAAATGGTAATAGTAATAGTTATGGAAATAATTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTGTTTCAAACACCAATATTTGGAATGGAATGA 1578 0.4081 MDSSSSSPPTHTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPLTPPSLTLTGSNTVDTSQEATEEGTTNLSIFSGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPTEPNSEPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGTIYANLSGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSSVSEIKSLEPIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILRFHNSNNNNNNNNNNISSVVTTTTPFNMDFSTHAPSNTNNDNQNAGFFSGSGILNVHQQNGSSSASASSSTSSSIPYATPIFSLNSNSSYDQNGNSNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05286 525 Gene3D AP2/ERF domain 157 229 IPR036955 GO:0003700|GO:0006355
Trre15g05286 525 Gene3D AP2/ERF domain 263 323 IPR036955 GO:0003700|GO:0006355
Trre15g05286 525 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 ProSiteProfiles AP2/ERF domain profile. 263 321 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 428 - -
Trre15g05286 525 CDD AP2 156 229 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 FunFam AP2-like ethylene-responsive transcription factor ANT 156 229 - -
Trre15g05286 525 MobiDBLite consensus disorder prediction 336 355 - -
Trre15g05286 525 FunFam AP2-like ethylene-responsive transcription factor 262 323 - -
Trre15g05286 525 SMART rav1_2 263 327 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 SMART rav1_2 157 233 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 CDD AP2 262 323 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 Pfam AP2 domain 157 219 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 Pfam AP2 domain 263 313 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 ProSiteProfiles AP2/ERF domain profile. 157 227 IPR001471 GO:0003700|GO:0006355
Trre15g05286 525 SUPERFAMILY DNA-binding domain 156 229 IPR016177 GO:0003677
Trre15g05286 525 SUPERFAMILY DNA-binding domain 262 323 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05286 Trre-Chr15 62182825 62187123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05286 111 525 AP2-EREBP Transcription Factor Family AT5G57390 55.835 5.48e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g05286 AP2 4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05286 K09285 - gmx:100803558 649.432