Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05285 ATGGACTCATCCTCTTCTTCACCCCCCACACATACTAACAACACCTCCCTCGCTTTCTCTCTTTCCAATACTCATTTTCCTAATATTCCTTCTCACTCTTCTTCCTCTCACCTCTCTCTTTTTCACTCATTCACCACTTTTCCTCCATTAACACCACCATCTCTCACTCTCACAGGAAGCAACACCGTAGATACATCACAGGAGGCAACTGAAGAAGGAACCACCAACCTCTCCATATTCAGCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCTCCGTCGCAACAACAACCGCCACCACGTGTGCACCAACACAGCTTCATCAGTTTTCCACCGACATATACGATTCGGAGCTAAAGAAAACAATATCTGCTTGCTTCCAAGGTGGTTACCCCACCGAACCAAACTCCGAACCTCGGAAACTGTCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGCACTTCAATCTATCGAGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGTAGAAGAGAAGGACAAAGCAGAAAAGGAAGACAAGGTGGCTATGACAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGCTATGACGTAAAGAGCATTGCAAACAGTTCACTTCCAATAGGTGGTTTATCAAACAAGAACAACAAAAATTCAACAGATTCATCGGTATCAGAAATCAAAAGCCTCGAACCAATTCAGTCCGATGAAAGGGATCATCCATCATCAGTTTCATCAGCGACAACTTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCTAACATTCTCAGATTCCATAACAGTAATAATAATAATAATAATAATAATAATAATATTTCTAGCGTTGTTACTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTTCAAATACCAACAATGATAATCAAAATGCAGGGTTTTTCAGTGGATCAGGTATCTTAAATGTTCATCAACAAAATGGTTCTTCATCTGCATCTGCATCATCTTCAACAAGTAGTTCAATTCCATATGCTACACCAATATTTTCTTTAAATAGTAATAGTAGTTATGATCAAAATGGTAATAGTAATAGTTATGGAAATAATTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTGTTTCAAACACCAATATTTGGAATGGAATGA 1557 0.411 MDSSSSSPPTHTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPLTPPSLTLTGSNTVDTSQEATEEGTTNLSIFSGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPTEPNSEPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSSVSEIKSLEPIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILRFHNSNNNNNNNNNNISSVVTTTTPFNMDFSTHAPSNTNNDNQNAGFFSGSGILNVHQQNGSSSASASSSTSSSIPYATPIFSLNSNSSYDQNGNSNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05285 518 SUPERFAMILY DNA-binding domain 156 222 IPR016177 GO:0003677
Trre15g05285 518 CDD AP2 156 222 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 ProSiteProfiles AP2/ERF domain profile. 256 314 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 Gene3D AP2/ERF domain 157 222 IPR036955 GO:0003700|GO:0006355
Trre15g05285 518 Gene3D AP2/ERF domain 256 316 IPR036955 GO:0003700|GO:0006355
Trre15g05285 518 ProSiteProfiles AP2/ERF domain profile. 157 220 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 FunFam AP2-like ethylene-responsive transcription factor 255 316 - -
Trre15g05285 518 MobiDBLite consensus disorder prediction 329 348 - -
Trre15g05285 518 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 SMART rav1_2 157 226 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 SMART rav1_2 256 320 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 Pfam AP2 domain 157 212 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Trre15g05285 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 422 - -
Trre15g05285 518 SUPERFAMILY DNA-binding domain 255 316 IPR016177 GO:0003677
Trre15g05285 518 FunFam AP2-like ethylene-responsive transcription factor ANT 156 222 - -
Trre15g05285 518 CDD AP2 255 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05285 Trre-Chr15 62182825 62187123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05285 111 518 AP2-EREBP Transcription Factor Family AT5G57390 56.120 3.80e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g05285 AP2 9.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05285 K09285 - gmx:100803558 650.973