Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05259 ATGTCTTCTGTTGAAGAGAAAAACAAGGAAGGAAAAAAGATGCAAAAAAGCTACTTTGATGTGGTTGGTTTATGTTGTTCTTCAGAGGTACCTCTGATTGAAAACATTCTTAAACCTCTCCAAGGAATCAAAGAGGTTTCTGTCATCGTACCATCAAGAACTGTCATCGTTGTTCATAACACAAATCTCATTTCTCAACTCCAAATTGTTAAGGCATTGAATCAAGCAAGACTAGAGGCAAATATTATAGTGTATGGAGATGAAAAACACAAAAAACAATGGCCAAGTATTTACTCAATTGCTTCTGGATTATTACTTGCACTTTCATTTCTAAAATTTGTGTATCCACCTTTGAAATATCTTGCTCTTGGAGCTGTTGCTGCCGGTGCCGTTCCGATCATCTTGAAAGCTATTGTGTCCATTCGGAACGTTAGATTTGACATTAACATTCTTGTCATCATAGCAGTTATTGGGACAATTGCTATGGAAGATTATTTGGAAGCAGGCACCATTGTTTTCCTTTTCTCAATTGCAGAATGGTTAGAGTCAAGGGCTAGCCACAAGGCAAATGCTGTGATGTCGTCGTTGATGAGTATTGCTCCGCAAAAAGCAGTGATAGCTGAAACAGGAGAGGTTGTAGATGTTGATGAGGTGAAAGTGAGCACAATATTAGCAGTTAAAGCAGGAGAGGTTATACCTATTGATGGAGTCGTTTTAGATGGTAACTGCGAAGTTGACGAGAAAACACTGACCGGGGAATCATTCCCTGTAGCCAAACAAAAAGACTCTACTGTATGGGCTGGAACAATCAACTTAAATGGTTATATTAGTGTGAAGACTACTGCATTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAATTAGTCGAAGAAGCTCAAAACAGCAAAACCAGCACTCAAAGATTGATAGACAAGTTTGCAAAGTTTTATACTCCAGCTGTTGTAGTGATATCAACTCTTGTAGCAGTGGTTCCAATTATGTTAAAAGTACATAATGAAAAATATTGGCTTCACTTTGCACTAGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTGTACTTTCAACACCAGTTGCAACATTTTGTGCTTATACAAAAGCAGCTACATCTGGTCTTCTCATCAAAGGGGGTGATTCTCTTGAAACACTGGCAAAAATTAAGATAATGGCTTTTGACAAAACTGGTACCATAACAAAGGGTGAATTTGTGGTCACAAATTTTCAATCTCTTTCAGATGACATTGATTTGAACACATTAATTTACTGGGTGTCAAGCATTGAGAGCAAATCAAGCCATCCATTGGCAGAAGCAATTGTTGACCACGGAAGATCTATCTCTATTGAACCAAATCCGGAAAAGGTGACGGAATTTGAAAATTTCCCTGGAGAAGGAATCTGTGGAAAAATTGATGACAGAGTTCTTTACATTGGAAATAAAAAAATCGCCACAAGGGCAGGGTCTGAAACAGTTCCGAGCTTAGAAGGCGAAGTTCATGGAGGAAAGACTATTGGCTACATATACTCAGGATCAATCCCCGTTGGAATTTTCTCTCTATCTGATGCTTGTCGATCAGGGGTTCAGGAGGCAATAAGGAAGCTAAAGTTGATGGGAATCAAAACCGCAATGCTCACCGGAGATTGCCAATCAGCTGCAATGCAAGCACAGGAACAGTTAGGTAATGCCTTGGAGGTAGTCCATGCAGACCTGTTACCGGAGGGCAAGGTAAAAATCATCTCCGAATTTAAAAGGGAAGGCCGAACAGCCATGCTAGGAGATGGTATCAATGATGCGCCGGCATTAGCTTTGGCTGATATCGGAATATCAATGGGAATTTCAGGTTCGGCATTAGCAACCGAAACTGGGGACATCATTCTTATGTCAAATGACCTCAGAAAAATCCCAGAAGCAATTAAACTTGCTCGGAAATCTAGAAGGAAGGTGATAGAGAACATTGTATTGTCCGTAATCACTAAGGTTGCAATCCTTGCATTGGCAATTGCTGGTCATCCAATTGTTTGGGCAGCAGTTCTTGCTGATGTTGGAACATGTCTGTTGGTCATCTTAAACAGCATGTTACTTTTGCGGAAAAATCACAAACATGACGGAAAAAGTTGTAAATCATCCGCTCAACATCATGTCCACAAACATGGATGTGGTGACACTAACAGCGGATCCTCTCATCATCATCATCATCATCATGATCAACATCACCATCACCATCAGCATCCGAATCAACATCATAGCCATAAGCATTGTTGCTCAGAAAAGGTTGAGCCCAAGAAGTGTGCCTCCCAGTCATGTTCCTCAAAGAATCCACCCTGCACTTCAAATCCAAGTTTAAGTGGAAATGTTGATCATCTCAAAAACATGGAGAATCATGATCAATGTAAAGGAAGTGATGAATTACATGAATCAGATCACTGTCATCATGGAACATGTGACAAGATTCAAGATGTAGTCCACAAGCATGATATTGAAAACAAGTGTTGTTCAGATTCACACAATGTGGCTCTAAATGTCGAAGATACTGGTGCAGCTTCGGTACACAGTCATGACAATTGTTTAGCACATAAGTCCCATGGGGAAAAACACTGCCACAACCAAAATATTGACATGGTTACTCATGATAGCACTTCACTTGGTTCTCCATGTCATCTCCATTCCTGTGATGATAAAGAAAGCCAACAATTTACTAAGCATTGCCACTCGAACCATATTCACGACCATGGAACGATTCATGACATTCATCACAAAAAACCAGGTTGTCATTCTGATTTTAAGGAGCACGCGACAGATGAAATATCCATCGACATCATCACCGAGCACATGGAATCATCGTTGAAGCACGGCTGTTCAAGTTTGGCAGAGAAAGAAAAAGATTCCTGTAAAGACTGCTCCAAACCATGTGAGATTTTGCCTGTGGAGTGTGATAGCTGTGAGGTTTTGAATGAGAAAGAAGTTAGTTCATGTTGCAAGAATGATTGTTCTTCAAAGGAATCGATCGAATCATCAATTATGCATGCTTGTATTAGTTTTGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGTTACATGAAGGAATGTTGTGGCAGGCATAGACATTCAGGAGCTGGTAGTTTTGTAGGAGGATTATCAGAAATAGTTACAGAATAG 3174 0.4008 MSSVEEKNKEGKKMQKSYFDVVGLCCSSEVPLIENILKPLQGIKEVSVIVPSRTVIVVHNTNLISQLQIVKALNQARLEANIIVYGDEKHKKQWPSIYSIASGLLLALSFLKFVYPPLKYLALGAVAAGAVPIILKAIVSIRNVRFDINILVIIAVIGTIAMEDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMSIAPQKAVIAETGEVVDVDEVKVSTILAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVVPIMLKVHNEKYWLHFALVVLVSACPCALVLSTPVATFCAYTKAATSGLLIKGGDSLETLAKIKIMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLIYWVSSIESKSSHPLAEAIVDHGRSISIEPNPEKVTEFENFPGEGICGKIDDRVLYIGNKKIATRAGSETVPSLEGEVHGGKTIGYIYSGSIPVGIFSLSDACRSGVQEAIRKLKLMGIKTAMLTGDCQSAAMQAQEQLGNALEVVHADLLPEGKVKIISEFKREGRTAMLGDGINDAPALALADIGISMGISGSALATETGDIILMSNDLRKIPEAIKLARKSRRKVIENIVLSVITKVAILALAIAGHPIVWAAVLADVGTCLLVILNSMLLLRKNHKHDGKSCKSSAQHHVHKHGCGDTNSGSSHHHHHHHDQHHHHHQHPNQHHSHKHCCSEKVEPKKCASQSCSSKNPPCTSNPSLSGNVDHLKNMENHDQCKGSDELHESDHCHHGTCDKIQDVVHKHDIENKCCSDSHNVALNVEDTGAASVHSHDNCLAHKSHGEKHCHNQNIDMVTHDSTSLGSPCHLHSCDDKESQQFTKHCHSNHIHDHGTIHDIHHKKPGCHSDFKEHATDEISIDIITEHMESSLKHGCSSLAEKEKDSCKDCSKPCEILPVECDSCEVLNEKEVSSCCKNDCSSKESIESSIMHACISFDKREVGGCCKSYMKECCGRHRHSGAGSFVGGLSEIVTE 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05259 1057 Gene3D - 186 300 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 597 616 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 543 553 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 246 260 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 521 532 - -
Trre15g05259 1057 PRINTS P-type cation-transporting ATPase superfamily signature 621 633 - -
Trre15g05259 1057 Pfam E1-E2 ATPase 207 375 - -
Trre15g05259 1057 FunFam Copper-transporting ATPase 1, putative 186 300 - -
Trre15g05259 1057 FunFam Putative cadmium/zinc-transporting ATPase 3 11 84 - -
Trre15g05259 1057 NCBIfam heavy metal translocating P-type ATPase 148 700 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre15g05259 1057 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 391 IPR023298 -
Trre15g05259 1057 SUPERFAMILY HAD-like 397 698 IPR036412 -
Trre15g05259 1057 PRINTS H+-transporting ATPase (proton pump) signature 629 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g05259 1057 PRINTS H+-transporting ATPase (proton pump) signature 597 613 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g05259 1057 CDD P-type_ATPase_HM 100 699 - -
Trre15g05259 1057 Pfam haloacid dehalogenase-like hydrolase 393 611 - -
Trre15g05259 1057 Gene3D - 11 83 - -
Trre15g05259 1057 MobiDBLite consensus disorder prediction 708 757 - -
Trre15g05259 1057 MobiDBLite consensus disorder prediction 735 754 - -
Trre15g05259 1057 Gene3D - 388 648 IPR023214 -
Trre15g05259 1057 SUPERFAMILY HMA, heavy metal-associated domain 12 81 IPR036163 GO:0046872
Trre15g05259 1057 Gene3D - 408 529 IPR023299 GO:0000166
Trre15g05259 1057 SFLD Haloacid Dehalogenase 380 649 - -
Trre15g05259 1057 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Trre15g05259 1057 SUPERFAMILY Calcium ATPase, transduction domain A 211 296 IPR008250 -
Trre15g05259 1057 SFLD p-type atpase 380 649 IPR044492 -
Trre15g05259 1057 NCBIfam HAD-IC family P-type ATPase 171 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g05259 1057 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 10 703 - -
Trre15g05259 1057 NCBIfam cadmium family heavy metal-translocating P-type ATPase 148 702 - -
Trre15g05259 1057 ProSitePatterns E1-E2 ATPases phosphorylation site. 399 405 IPR018303 -
Trre15g05259 1057 MobiDBLite consensus disorder prediction 708 734 - -
Trre15g05259 1057 FunFam Putative cadmium/zinc-transporting ATPase 3 408 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05259 Trre-Chr15 61973223 61982069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05259 12 1057 Primary Pumps ATPases AT4G30110 53.321 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05259 K01534 - gmx:100817567 1419.45