Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05250 ATGTCTTCGTGTTTGAGTGGAACAGGAGCAAGATTCGATTTAGACATAGTTAAATCACCACCATGTTCATGGAGTAGAACAACATCACAAACATCTTCTTCACCTTCATCAACAATCTCAGAATCAAGCAATTCACCACTTATTACAATCTCAACCACTAAACCCCGAACCCCCAGAAAACGACCCAACCAAACCTACAACGAAGCTGCAACACTTCTTTCAACTGCATATCCGAACCTCTTCACTACTCCCAACCTAAAAACAAATCCAAATAATAAATTCTCCAAATCCGAAAAAACTCATGAACAACAATTCGACTCTTCTCAACTTTTTTTACCTCTCGGTGTATTTGACACGTCATCATCTTTTTTACTTCACGGCCCAATTCATCAGCCCATTAGGCCCAATTTCCCCTCTTCCGAGCCCAAACCGGTGAAACCGTGTCAGAGTCCCGGAGAAATTAGTTCAATGGTGAAATCCCTTGAATTGAACGAAGACGATGATGATTTCGATGCCGAATCGATTCTCGATGAGGAAATTGAAGAAGGAATTGATAGTATCATGGGAGGGAGAATTGAACAAGATGAATCTAATGTCTCTACTTTCTCTCATCATCATCCATGGATTGGTTTTGGCGGGAAATTCGATTTCCGGTTAGGGTTACAGAGAGCTGGAGTCAGAGCTCTGAGAAATGTTGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCTAAAATATGCAGTGTCGGTAACAACAAGACGGCGGCGCCGGTGACTGAAAAGAAGAAGAAAAAGAAAGTAGTTGCGGCGGTGGTGGAGAAATCGAAGGAGGAGTTGTTGAAAGAAACAGAGTTGCCAAAGTCGAAAACCAACGGTTTGTTGTTGAAATTGAATTACGACGGCGTTCGGAAAGCTTGGTCTGACCGGGGAACACCGTTCGCCGACGACAGCCCTGTCTCCGATGCTCCTGGAAACGATGTCAATGCACGGTTGTCACAAATTGATTTGTTGTGGGAGAATGGAGGAGGAAGTGGTGGTGTAAGAGAAGCTAGTGTGTTGCGCTACAAAGAAAAACGACGTACACGTCTCTTCTCTAAGAAGATCAGATACCAAGTCAGGAAAGTCAATGCAGATCGACGGCCAAGAATGAAGGGGCGATTTGTTAGGAGGCTGAATGCTAGCTCAAATGAACACAAATGGTTTTTGTAG 1227 0.4352 MSSCLSGTGARFDLDIVKSPPCSWSRTTSQTSSSPSSTISESSNSPLITISTTKPRTPRKRPNQTYNEAATLLSTAYPNLFTTPNLKTNPNNKFSKSEKTHEQQFDSSQLFLPLGVFDTSSSFLLHGPIHQPIRPNFPSSEPKPVKPCQSPGEISSMVKSLELNEDDDDFDAESILDEEIEEGIDSIMGGRIEQDESNVSTFSHHHPWIGFGGKFDFRLGLQRAGVRALRNVDEGNWWNFPAVDMLKISPKICSVGNNKTAAPVTEKKKKKKVVAAVVEKSKEELLKETELPKSKTNGLLLKLNYDGVRKAWSDRGTPFADDSPVSDAPGNDVNARLSQIDLLWENGGGSGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNASSNEHKWFL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05250 408 MobiDBLite consensus disorder prediction 19 63 - -
Trre15g05250 408 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 398 - -
Trre15g05250 408 MobiDBLite consensus disorder prediction 21 63 - -
Trre15g05250 408 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Trre15g05250 408 MobiDBLite consensus disorder prediction 81 101 - -
Trre15g05250 408 Pfam CCT motif 354 395 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05250 Trre-Chr15 61827334 61830096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05250 268 396 C2C2-CO-like Transcription Factor Family AT1G25440 43.537 4.26e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g05250 CCT 7.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05250 - - aprc:113845796 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05250 15 61827334 61830096 Trre15g05250 15 61827334 61830096 ECH
Trre15g05250 15 61827334 61830096 Trre3g02284 3 20942620 20943507 PCT