Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05249 ATGCGTCCACCAGCAACAAAAGTCAATTATAAAGTAGGAGACAAAATTGAGGTCTGTAGCAAAGAAGAAGGGTTTATAGGTTCGTACTACGAAGCCACAATTGCTTCGTGTCTTGAGAATGGGAAATATGTGGTTCGTTACAAAACCATACTTGAAGATGACAAATCAGATCTTCTTAAGGAGACACTTTTCCCCAAGGATATTCGTCCAATACCGCCGCGTGTCAAAAAATCTCACAGTTTCCAACTCGGCCAAAGAGTTGATGTTTTTTGTAACGATGGCTGGTGGATAGGGATAATCATTGGTCAGAAGATCCTCATCCGGAAGCGTTATTACATTAGGGTGCATTTTATCGCTCTCAATAAAATGATGTACTGCCCTTGTACTCGGATCAGGGTTCACAAGGAGTTAATTTATGGAGAGTGGATCTGA 432 0.412 MRPPATKVNYKVGDKIEVCSKEEGFIGSYYEATIASCLENGKYVVRYKTILEDDKSDLLKETLFPKDIRPIPPRVKKSHSFQLGQRVDVFCNDGWWIGIIIGQKILIRKRYYIRVHFIALNKMMYCPCTRIRVHKELIYGEWI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05249 143 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Trre15g05249 143 Gene3D - 1 78 - -
Trre15g05249 143 SMART agenet_At_2 8 76 IPR014002 -
Trre15g05249 143 SMART agenet_At_2 79 139 IPR014002 -
Trre15g05249 143 Pfam Agenet domain 13 73 IPR008395 -
Trre15g05249 143 SUPERFAMILY Chromo domain-like 79 136 IPR016197 -
Trre15g05249 143 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05249 Trre-Chr15 61809447 61809878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05249 20 136 PHD Transcription Factor Family AT5G58610 30.147 2.21e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05249 - - cam:101489110 164.466