Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05234 ATGAATTTGTCAAAGGATTCTCCTCCTACGGATCATGATTTAGAGGCTGGTTCTCCCAACGCCAATACATGTTCTTCTGATTTAGTTGGTGAAGACAACACATCTGATCCATTTGATATTAGCAGAACAAAGAATGCTTCCATTCAACGACTCAATCGTTGGAGGAAAGCTGCATTTGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAGGAGAGGAAGCAAATATTGAGGAAGATTATAGTGCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGAGAAGAACACAAATAGAACCATCCTACCTCCTTCAACTTCAAGCTCTAATGGAGATTTTTCAATTGGACAAGAGAAACTTTCTTCAATCTCAAGAGAGCATGATATTAATGCTCTGAAAGAATATGGAGGGGTTGTAGGGTTGTCAAATTTGTTGAAAACCAATTTAGTGAAGGGTGCTAAAGGTAATGATGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCTAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCTGTGGCCTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTTCTTGTTATTGCTGTTACAGCCATAACCGATTATAAGCAGTCTCTTCAATTTGAAGATTTAAATGAGCATAAAAGAAACATATATTTTCAGGTTATTAGAGATGGCAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCAATAGGCATTCTAAGGAACCTTTTTTGATGTCTGGATGTAAAGTCGCAGATGGAAGCGGCACTATGCTGGTAACCGCTGTTGGTACTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACACTGGTGAAGAAACACCTTTGCAGGTACGCTTGAATGGCCTTGCTACCTTCATCGGTATTGCTGGACTCACTGTGGCTGTCGTTGTTCTAGTTGTGCTACTTGCCAGATATTTCACTGGGCACACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGAAAGACCAGGTTCGGTGATGCTCTTAATGGAGTAATTAAGATAGCCACTATTGCGGTCACCATCGTAGTGGTTGCAGTGCCTGAAGGACTCCCTTTAGCAGTCACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGATCAGCCACAACCATTTGCAGTGATAAGACTGGAACGTTGACAATGAATCAGATGACTGTGGTTGAGGCATGTGTTGGCGGGAAGAAGATTATTCCTCCTGACGATAAGTCACAGCTTTCTCCTATCCTTCACTCTTTGTTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTTTGTACCTAAGGGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTGCTAGATCAGAATCATCAATCATACATGTCTTTCCATTCAACTCAGACAAAAAAAGAGGCGGAGTAGCACTACAGAAGCCTGACAGTGGAATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTTGCCTTCTGCACTCAGTATTATGATACAAATGATCAGTTGGTGGATATGGATGAAGAGAAGATGAAAGTTTTTAGAAATGTTATTGAAGACATGGCTGCTGACAGTCTACGCTGTGTTGCCATTGCATATAGATTATTAGATGAAATGGAGAACATTCCAACCAGCGAAGAAAAAATTGCTCACTGGTTACCAGAAGATGATCTTGTTTTACTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTCTGGAATGTGGAATACTTGGTTCATTTGCTGACGCTACAGAGCCAAACATCATTGAAGGCAAAACATTCCGAGCCTTGTCAGATGAACAGAGAGAAGAAATTGTTGAAAGGATCTTGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTTTGCTTGTTCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACAGGAGACGGAACAAATGATGCTCCTGCGCTACATGAGGCCGATATAGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTCAAATGGGGGCGATCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACCGTCAATATAGCAGCTCTTGTTATCAACACCATTGCTTCATTTTCCACTGGCGAAGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATATTCTGTGGAGGAATCTGCTAATACAGGCAATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAACATACTGAGTCTGAGGCATGAAAGCAACGACTTTGCACTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTTTGTCAAGTATTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATTTTCAAGGGTGTTACCAGAAATTACCTATTTATGGTGATAGTGGGATTAACTATAGTACTCCAGATTGTCATCATTGAATTTCTTGGAACTTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTGTGTTACTATAGGATTTATCAGCTGGCCTCTGGCCGTGGTTGGAAAACTGATACCAGTACCAGCAGTAACTCCGATGAATAACTGCTTTCGAAGATTTCGTCATGGAAGAACTAAAAGAAAGATGGAGTGTAAAGCTTCTAAGTAG 3264 0.4115 MNLSKDSPPTDHDLEAGSPNANTCSSDLVGEDNTSDPFDISRTKNASIQRLNRWRKAAFVLNASRRFRYTLDLKKEEERKQILRKIIVHIRAIQAAYRFKEAEKNTNRTILPPSTSSSNGDFSIGQEKLSSISREHDINALKEYGGVVGLSNLLKTNLVKGAKGNDADLVIRRNAFGSNNYPRKKGRSFLMFIWDACKDLTLIILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVFLVIAVTAITDYKQSLQFEDLNEHKRNIYFQVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVNRHSKEPFLMSGCKVADGSGTMLVTAVGTNTEWGLLMASISEDTGEETPLQVRLNGLATFIGIAGLTVAVVVLVVLLARYFTGHTKNPDGSVQFIAGKTRFGDALNGVIKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKIIPPDDKSQLSPILHSLLIEGVAQNTNGSVFVPKGGNGVEVSGSPTEKAILHWGFQLGMDFEAARSESSIIHVFPFNSDKKRGGVALQKPDSGIHIHWKGAAEIVLAFCTQYYDTNDQLVDMDEEKMKVFRNVIEDMAADSLRCVAIAYRLLDEMENIPTSEEKIAHWLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIALECGILGSFADATEPNIIEGKTFRALSDEQREEIVERILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINTIASFSTGEVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNILWRNLLIQAMYQVSVLLILNFQGRNILSLRHESNDFALKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMVIVGLTIVLQIVIIEFLGTFTKTVKLNWKQWLICVTIGFISWPLAVVGKLIPVPAVTPMNNCFRRFRHGRTKRKMECKASK 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05234 1087 FunFam Calcium-transporting ATPase 497 695 - -
Trre15g05234 1087 SFLD p-type atpase 469 847 IPR044492 -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 9 plasma membrane-type 341 511 - -
Trre15g05234 1087 Gene3D - 46 102 - -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 240 363 - -
Trre15g05234 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Trre15g05234 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 1059 IPR023298 -
Trre15g05234 1087 Pfam Cation transporting ATPase, C-terminus 880 1057 IPR006068 -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 795 814 - -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 311 325 - -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Trre15g05234 1087 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 195 252 - -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 812 1061 - -
Trre15g05234 1087 NCBIfam HAD-IC family P-type ATPase 762 875 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g05234 1087 NCBIfam HAD-IC family P-type ATPase 427 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g05234 1087 Pfam Cation transporter/ATPase, N-terminus 147 212 IPR004014 -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 689 840 - -
Trre15g05234 1087 Gene3D - 195 1048 - -
Trre15g05234 1087 PANTHER CATION TRANSPORTING ATPASE 109 1059 - -
Trre15g05234 1087 SUPERFAMILY HAD-like 485 900 IPR036412 -
Trre15g05234 1087 SMART Cation_ATPase_N_a_2 143 217 IPR004014 -
Trre15g05234 1087 SUPERFAMILY Calcium ATPase, transduction domain A 264 360 IPR008250 -
Trre15g05234 1087 CDD P-type_ATPase_Ca_PMCA-like 172 927 - -
Trre15g05234 1087 Pfam haloacid dehalogenase-like hydrolase 484 809 - -
Trre15g05234 1087 Pfam E1-E2 ATPase 266 465 - -
Trre15g05234 1087 MobiDBLite consensus disorder prediction 1 41 - -
Trre15g05234 1087 SFLD C1.7: P-type atpase like 469 847 - -
Trre15g05234 1087 Gene3D - 497 695 IPR023299 GO:0000166
Trre15g05234 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Trre15g05234 1087 FunFam Calcium-transporting ATPase 46 102 - -
Trre15g05234 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 692 IPR023299 GO:0000166
Trre15g05234 1087 Gene3D - 171 363 - -
Trre15g05234 1087 Gene3D - 484 840 IPR023214 -
Trre15g05234 1087 MobiDBLite consensus disorder prediction 16 32 - -
Trre15g05234 1087 NCBIfam calcium-translocating P-type ATPase, PMCA-type 135 1059 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05234 Trre-Chr15 61692221 61700494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05234 11 1076 Primary Pumps ATPases AT4G29900 70.880 0.0 1523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05234 K01537 - gmx:100790157 1669.83