Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05226 ATGGCTGCAGATCCAGTAATGATTTCCAAGATGAGGATGCAAGAACAGATAGCTATACAAGAAGCTGCTTCTGCTGGAATGAAAAGCATGGAACATTTCATTCGTGTGCTTTCTTCTTCATCTTCTTCTTCGTCTTCTGATCAACGAAACCATTTAGATCTGGTAAATAAACTCGATTGCACTGAAATTACTGATTTCACCGTTTCTAAGTTCAAACAGGTTATTAACTTGTTGAATCGAACCGGTCACGCTCGCTTTCGTCGTGCACCGTCCAATTTTTCTTCTTCTCCATCTTCTTCTTCTTCTCAATTTCATTCACAGATTCAATCTGAAAAATTCAACCCTAAACCACAGTCAACTACTCTTGATTTTGCTAAACCAATCCAAACTGTTAAGCCAACTCCAAATCTGAAACCTAAACAAAACCAGTCTACAGATTTATCTGTTTCTCAATACTCAAAATCCAAAGAAACCTATAGCGTCTCCACCACTACTTCCTCCTTCCTTTCCACCATCACCGGAGACGGAAGCGTTTCCGACGGGAAAATAGGTCCTATCATCTCCTCCGGTAAGCCACCTCTCGCTTCATCTCACCGGAAAAGATGTCATGAAGCCACCGTCTCCGGCAAAGTCTCGTCCTCCGGTCCCTGCCATTGCTCCAAGAGAAGAAAATCTCGCGTGAAGAGAACAATTCGCGTCCCTGCAATAAGTTCCAAGGTCGCTGATATTCCCGCAGATGAATTCTCATGGAGGAAGTACGGTCAAAAACCTATTAAAGGTTCACCTTACCCACGTGGTTACTACAAGTGCAGTAGCATTAAAGGGTGTCCGGCGAGGAAGCATGTAGAAAGAGCACAAGATGATCCAAATATGCTTATTGTTACATATGAAGGAGAGCACCGACACGGGCAAACCGCCGGAACCGCTGCCGGATTCACCACATCTCAGGCTTCTTAA 957 0.4399 MAADPVMISKMRMQEQIAIQEAASAGMKSMEHFIRVLSSSSSSSSSDQRNHLDLVNKLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSNFSSSPSSSSSQFHSQIQSEKFNPKPQSTTLDFAKPIQTVKPTPNLKPKQNQSTDLSVSQYSKSKETYSVSTTTSSFLSTITGDGSVSDGKIGPIISSGKPPLASSHRKRCHEATVSGKVSSSGPCHCSKRRKSRVKRTIRVPAISSKVADIPADEFSWRKYGQKPIKGSPYPRGYYKCSSIKGCPARKHVERAQDDPNMLIVTYEGEHRHGQTAGTAAGFTTSQAS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05226 318 MobiDBLite consensus disorder prediction 130 149 - -
Trre15g05226 318 Gene3D WRKY domain 228 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05226 318 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05226 318 MobiDBLite consensus disorder prediction 134 149 - -
Trre15g05226 318 MobiDBLite consensus disorder prediction 88 121 - -
Trre15g05226 318 FunFam WRKY transcription factor 65 228 305 - -
Trre15g05226 318 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05226 318 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g05226 318 Pfam Plant zinc cluster domain 199 242 IPR018872 -
Trre15g05226 318 SUPERFAMILY WRKY DNA-binding domain 242 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g05226 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 308 IPR044810 GO:0003700
Trre15g05226 318 MobiDBLite consensus disorder prediction 87 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05226 Trre-Chr15 61653199 61654377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05226 12 305 WRKY Transcription Factor Family AT2G24570 52.516 7.23e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g05226 WRKY 4.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05226 - - gmx:732587 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05226 15 61653199 61654377 Trre15g05226 15 61653199 61654377 ECH
Trre9g00806 9 6169331 6171580 Trre15g05226 15 61653199 61654377 PCT