Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05224 ATGGATAAGCATCCTATGTATGAAAAATATGGCAATAACACAAGTACATCCTTTTGGGATTCTGAGAATAGCCAGGCTTCTCGAGTAAGAGACGAGGAAGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTGGGCAGAACTGAAATCAGCTACTAGAAATTTCCGTCCTGAAAATGTGTTAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTGATAAAGGAGGGAGCAGAATCAAAAAAAGGTGGGGGTTTGACTATTGCGATCAAGATATTGAATTCTCACAGTTCGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTCGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGTAAGCTATTTCTCGTGTATGAATTCATGCCCCGCGGTAGTTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGGCCACTTTCATGGGACAAAAGGCTGAAAGTTATAATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCGGAGAAAATTATACACAGAGATTTTAAGCCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAATCTGGTCCTTCCGATGATCACACTCACGTATCAACACGGGTTGTGGGAACAGGCATTTATGCTGCCCCGGAGTACATGGTCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGCTTGTTTTGGTGGAGGTATTAACAGGTAAGCGGATAGGGGAGATACTACGCATTAGTGAGCGAAAGTCCTTATGTGATTGGCTCAAATCAAACCTATTAAATAGAGCGAAATCGAGAAGCAACATGGATCCAAAGTTGGAGGGCAAGTATCCACCCAACTTAGCTTCGCAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAGCACAAAGTTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAATGATTGAAGCAGCAAATGATAAACCAACTGATAACAGAAAAAGGACCAGTAATTCCAGGGAAGTTCAACTACATGGCCAACCAGACGGTGGTTAA 1116 0.4238 MDKHPMYEKYGNNTSTSFWDSENSQASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPENVLGEGGFGKVFKGLIKEGAESKKGGGLTIAIKILNSHSSQGFAEWQSEVNFLGRLSHPNLVKLLGFGREDGKLFLVYEFMPRGSLDNHLFGRGSNVRPLSWDKRLKVIIGAARGLNFLHSEKIIHRDFKPSNILLDKAYTAKLSDFGLAKSGPSDDHTHVSTRVVGTGIYAAPEYMVTGHLYVKSDVYGFGLVLVEVLTGKRIGEILRISERKSLCDWLKSNLLNRAKSRSNMDPKLEGKYPPNLASQVAQLALKCIQTEHKVRPSMKEVVETLEMIEAANDKPTDNRKRTSNSREVQLHGQPDGG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05224 371 MobiDBLite consensus disorder prediction 344 371 - -
Trre15g05224 371 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 145 354 - -
Trre15g05224 371 Gene3D Phosphorylase Kinase; domain 1 45 144 - -
Trre15g05224 371 Pfam Protein tyrosine and serine/threonine kinase 64 339 IPR001245 GO:0004672|GO:0006468
Trre15g05224 371 Gene3D Transferase(Phosphotransferase) domain 1 145 365 - -
Trre15g05224 371 PANTHER OS01G0588500 PROTEIN-RELATED 26 343 - -
Trre15g05224 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre15g05224 371 SUPERFAMILY Protein kinase-like (PK-like) 41 341 IPR011009 -
Trre15g05224 371 ProSiteProfiles Protein kinase domain profile. 61 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05224 371 MobiDBLite consensus disorder prediction 344 360 - -
Trre15g05224 371 ProSitePatterns Protein kinases ATP-binding region signature. 67 97 IPR017441 GO:0005524
Trre15g05224 371 FunFam Serine/threonine-protein kinase BIK1 27 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05224 Trre-Chr15 61633032 61634950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05224 47 347 Glycoside Hydrolase AT3G07070 42.763 2.00e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g05224 PK_Tyr_Ser-Thr 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05224 - - gmx:100813304 549.666