Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05221 ATGGGGAACTGTTTGAATAGAAGTCTTCAATCCTCGGGCGATCGCCCCAACTCCAATACTGCTCCTGACACAAGCAGTCAATCAGGGAGTATTCTGTTTTCTGGTGGTCTCAGCAACTTAAGATTGATAAGGAACGGCAATTCCACATCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGTAGACTATTTAGTAGTAGTAATAATCATAGTAGTAGTAATAATCACTCAACAGGCAATAACACAAGTACATCCTTTTGGGATTCTGAGAATAGCCAGGCTTCTCGAGTAAGAGACGAGGAAGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTGGGCAGAACTGAAATCAGCTACTAGAAATTTCCGTCCTGAAAATGTGTTAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTGATAAAGGAGGGAGCAGAATCAAAAAAAGGTGGGGGTTTGACTATTGCGATCAAGATATTGAATTCTCACAGTTCGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTCGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGTAAGCTATTTCTCGTGTATGAATTCATGCCCCGCGGTAGTTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGGCCACTTTCATGGGACAAAAGGCTGAAAGTTATAATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCGGAGAAAATTATACACAGAGATTTTAAGCCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAATCTGGTCCTTCCGATGATCACACTCACGTATCAACACGGGTTGTGGGAACAGGCATTTATGCTGCCCCGGAGTACATGGTCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGCTTGTTTTGGTGGAGGTATTAACAGGTAAGCGGATAGGGGAGATACTACGCATTAGTGAGCGAAAGTCCTTATGTGATTGGCTCAAATCAAACCTATTAAATAGAGCGAAATCGAGAAGCAACATGGATCCAAAGTTGGAGGGCAAGTATCCACCCAACTTAGCTTCGCAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAGCACAAAGTTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAATGATTGAAGCAGCAAATGATAAACCAACTGATAGCAGAAAAAGGACCAGTAATTCCAGGGAAGTTCAACTACATGGCCAACCAGACGGTGGTTAA 1320 0.428 MGNCLNRSLQSSGDRPNSNTAPDTSSQSGSILFSGGLSNLRLIRNGNSTSLGRSSNSGGNSRLFSSSNNHSSSNNHSTGNNTSTSFWDSENSQASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPENVLGEGGFGKVFKGLIKEGAESKKGGGLTIAIKILNSHSSQGFAEWQSEVNFLGRLSHPNLVKLLGFGREDGKLFLVYEFMPRGSLDNHLFGRGSNVRPLSWDKRLKVIIGAARGLNFLHSEKIIHRDFKPSNILLDKAYTAKLSDFGLAKSGPSDDHTHVSTRVVGTGIYAAPEYMVTGHLYVKSDVYGFGLVLVEVLTGKRIGEILRISERKSLCDWLKSNLLNRAKSRSNMDPKLEGKYPPNLASQVAQLALKCIQTEHKVRPSMKEVVETLEMIEAANDKPTDSRKRTSNSREVQLHGQPDGG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05221 439 MobiDBLite consensus disorder prediction 48 93 - -
Trre15g05221 439 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 213 422 - -
Trre15g05221 439 ProSitePatterns Protein kinases ATP-binding region signature. 135 165 IPR017441 GO:0005524
Trre15g05221 439 Gene3D Transferase(Phosphotransferase) domain 1 213 433 - -
Trre15g05221 439 PANTHER OS01G0588500 PROTEIN-RELATED 76 411 - -
Trre15g05221 439 SUPERFAMILY Protein kinase-like (PK-like) 109 409 IPR011009 -
Trre15g05221 439 MobiDBLite consensus disorder prediction 411 428 - -
Trre15g05221 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Trre15g05221 439 Pfam Protein tyrosine and serine/threonine kinase 132 407 IPR001245 GO:0004672|GO:0006468
Trre15g05221 439 MobiDBLite consensus disorder prediction 411 439 - -
Trre15g05221 439 ProSiteProfiles Protein kinase domain profile. 129 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g05221 439 MobiDBLite consensus disorder prediction 48 92 - -
Trre15g05221 439 Gene3D Phosphorylase Kinase; domain 1 113 212 - -
Trre15g05221 439 FunFam Serine/threonine-protein kinase BIK1 95 212 - -
Trre15g05221 439 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05221 Trre-Chr15 61619998 61622495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05221 115 415 Glycoside Hydrolase AT3G07070 42.763 2.65e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g05221 PK_Tyr_Ser-Thr 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05221 - - gmx:100813304 592.808